Skip to content

Pull requests: nf-core/modules

New pull request New
219 Open 8,231 Closed
219 Open 8,231 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Add fgumi/extract
#11546 opened May 6, 2026 by atrigila Contributor • Draft
Disable implicit parallelism in variancepartition/dream
#11545 opened May 6, 2026 by delfiterradas Contributor • Draft
17 tasks
1
@delfiterradas
Revert "Fix dumpParametersToJson to be compatible with parameter typing" (#11532)
#11544 opened May 6, 2026 by pinin4fjords Member • Draft
1
Bump nextflow to 26.04.0
#11543 opened May 6, 2026 by nvnieuwk Contributor Loading…
17 tasks
2
fix(trimgalore): stack process_low_memory on top of process_low
#11541 opened May 6, 2026 by pinin4fjords Member Loading…
2
New Module: Octopusv/correct
#11540 opened May 6, 2026 by manascripts Member Loading…
12 of 13 tasks
1
Update to topics gappa/*
#11538 opened May 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
3
@LouisLeNezet
Remove fai index from bowtie2 modules
#11537 opened May 5, 2026 by Kevin-Brockers Contributor Loading…
5 of 6 tasks
nanofilt topic channel migration
#11534 opened May 5, 2026 by FernandoDuarteF Contributor Loading…
17 tasks
1
Bump VSEARCH version to 2.31.0
#11530 opened May 5, 2026 by pieterprovoost Loading…
4 of 17 tasks
7
fix: pass the expected input to bwamem1_index and bwamem2_index
#11520 opened May 4, 2026 by piplus2 Loading…
10 of 16 tasks
1
9
New module: sdrfpipelines/convertmhcquant
#11514 opened May 4, 2026 by jonasscheid Contributor Loading…
12 of 14 tasks
10
Add module to fetch SDRF files from PRIDE Archive
#11513 opened May 4, 2026 by jonasscheid Contributor Loading…
14 tasks done
8
feat(spikeinterface/sort): add module wrapping SpikeInterface 0.101.2 spike sorting
#11464 opened May 3, 2026 by olaflaitinen Member • Draft
8 of 12 tasks
Update gamma/gamma to using the versions topic channel size/s
#11462 opened May 1, 2026 by mribeirodantas Member Loading…
14 of 17 tasks
1
@mribeirodantas
1
nf-core-module-dev bots updating hmmer tools: hmmbuild, hmmsearch, hmmalign to topic versions and latest standards size/l
#11458 opened May 1, 2026 by vagkaratzas Contributor Loading…
9 of 17 tasks
1
feat: allow bwa-mem to output sam format
#11457 opened May 1, 2026 by piplus2 Loading…
7 of 17 tasks
1
6
Update whamg: topic versions, stub block, sanitizeOutput
#11450 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
3
Update wfmash: topic versions, stub block, sanitizeOutput
#11449 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
1
Update smoothxg: topic versions, stub block, sanitizeOutput
#11448 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
4
Update seqsero2: topic versions, stub block, sanitizeOutput
#11446 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
1
Update salsa2: topic versions, stub block, sanitizeOutput
#11445 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
2
Update mygene: topic versions, stub block, sanitizeOutput
#11441 opened Apr 30, 2026 by HReed1 Contributor Loading…
5 tasks done
3
Add stub block and migrate plasmidid to topic channels
#11438 opened Apr 30, 2026 by HReed1 Contributor Loading…
7
Add stub block and migrate pairix to topic channels
#11437 opened Apr 30, 2026 by HReed1 Contributor Loading…
2
ProTip! Type g i on any issue or pull request to go back to the issue listing page.