Update wfmash: topic versions, stub block, sanitizeOutput#11449
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HReed1 wants to merge 4 commits intonf-core:masterfrom
Open
Update wfmash: topic versions, stub block, sanitizeOutput#11449HReed1 wants to merge 4 commits intonf-core:masterfrom
HReed1 wants to merge 4 commits intonf-core:masterfrom
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SPPearce
requested changes
May 1, 2026
| assertAll( | ||
| { assert process.success }, | ||
| { assert snapshot(process.out.versions).match("versions") } | ||
| { assert snapshot(sanitizeOutput(process.out)).match() } |
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The paf channel is unstable, add as such into sanitizeOutput.
…apshots - main.nf: emit: versions -> emit: versions_wfmash - meta.yml: output key versions: -> versions_wfmash: - main.nf/meta.yml: simplify eval string to use sed instead of dual cuts - tests/main.nf.test.snap: regenerate snapshots Local lint: 52/0. Local nf-test: 2/2 passed.
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PR checklist
--profile docker,wavetests.nf-core modules lint).nf-test test).Description of changes
Migrates the wfmash module to the nf-core v4.0.1 architecture:
versions.ymlfile emission with dynamiceval()tuple emission on thetopic: versionschannel.stub:block for CI/CD stub-run support.sanitizeOutput(process.out)per nf-test best practices.output: versions_wfmashandtopics: versionssections.Part of the v4.0.1 standardization effort tracked in #11323.
Part of #4570