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For umitools use only umi_dedup.sorted.log in multiqc_report #1571

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Merged
pinin4fjords merged 6 commits into from
Aug 13, 2025
Merged

For umitools use only umi_dedup.sorted.log in multiqc_report #1571

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952696c
ignore umi_dedup.transcriptome.sorted.log, only umi_dedup.sorted.log
idot Jun 17, 2025
58e7357
changelog
idot Jun 17, 2025
4d8ff15
changelog PR# correct
idot Jun 17, 2025
f4c6058
Merge branch 'dev' into mqc_umitools_genomic_only
pinin4fjords Aug 13, 2025
88e05e4
remove excess whitespace
pinin4fjords Aug 13, 2025
4536e45
Merge branch 'dev' into mqc_umitools_genomic_only
pinin4fjords Aug 13, 2025
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -11,10 +11,13 @@ Special thanks to the following for their contributions to the release:

- [Jonathan Manning](https://github.com/pinin4fjords)
- [Maxime Garcia](https://github.com/maxulysse)
- [Ido Tamir](https://github.com/idot)
- [Usman Rashid](https://github.com/GallVp)

### Enhancements & fixes

- [PR #1568](https://github.com/nf-core/rnaseq/pull/1568) - Bump version after release 3.19.0
- [PR #1571](https://github.com/nf-core/rnaseq/pull/1571) - For umitools use only umi_dedup.sorted.log in multiqc_report
- [PR #1573](https://github.com/nf-core/rnaseq/pull/1573) - Fix salmon.merged.SummarizedExperiment.rds name collision
- [PR #1585](https://github.com/nf-core/rnaseq/pull/1585) - Update awsfulltest.yml to restore aligner-wise outputs
- [PR #1580](https://github.com/nf-core/rnaseq/pull/1580) - Template update for nf-core/tools v3.3.2
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3 changes: 3 additions & 0 deletions workflows/rnaseq/assets/multiqc/multiqc_config.yml
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Expand Up @@ -210,6 +210,9 @@ sp:
picard/wgs_metrics:
skip: true

fn_ignore_files:
- "*umi_dedup.transcriptome.sorted.log"

# See https://github.com/ewels/MultiQC_TestData/blob/master/data/custom_content/with_config/table_headerconfig/multiqc_config.yaml
custom_data:
fail_trimmed_samples:
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