Fix missing Bracken results in the MultiQC report #1508
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… the output.md docs
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Warning Newer version of the nf-core template is available. Your pipeline is using an old version of the nf-core template: 3.0.2. For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation. |
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I'm seeing lots of failed CI tests with errors like the following
Not sure if this the actual issue or if it's downstream of the real problem. Anybody know what the issue is? |
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This PR implements fixes suggested by @egreenberg7 to allow Bracken results to show up in the MultiQC.
The MultiQC config yaml file is updated, and an additional sentence is added to the
output.mdfile to clarify that Bracken results are shown under Kraken in the MultiQC report.PR checklist
docs/output.mdis updated.