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Capture nextclade tag version #9584

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Merged
ammaraziz merged 4 commits into from
Jan 15, 2026
Merged

Capture nextclade tag version #9584

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ee4b29a
Capture nextclade tag version
ammaraziz Dec 18, 2025
09819f3
update snapshot
ammaraziz Jan 14, 2026
f4a2982
Merge branch 'master' into master
ammaraziz Jan 14, 2026
c9673cb
Merge branch 'master' into master
Joon-Klaps Jan 15, 2026
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1 change: 1 addition & 0 deletions modules/nf-core/nextclade/datasetget/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -34,6 +34,7 @@ process NEXTCLADE_DATASETGET {
cat <<-END_VERSIONS > versions.yml
"${task.process}":
nextclade: \$(echo \$(nextclade --version 2>&1) | sed 's/^.*nextclade //; s/ .*\$//')
nextclade-tag: \$(grep "tag" $dataset/pathogen.json | sed -n 's/.*"tag": "\\([0-9-]\\+Z\\)".*/\\1/p')
END_VERSIONS
"""

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