Update trimgalore#9570

Merged

vagkaratzas merged 16 commits intomasterfrom

update-trimgalore

Dec 15, 2025

Commits on Dec 12, 2025

testing solo trim-galore container, without adding extra cutadapt and pigz
vagkaratzas
committed

Commits on Dec 15, 2025

Syntax updates and topic version for manta modules (#9556)

nvnieuwk
authored and
vagkaratzas
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Syntax updates and topics of jasminesv (#9554)

nvnieuwk
authored and
vagkaratzas
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Update `Modkit pileup` (#9553)

authored and
vagkaratzas
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Standarize and alignment for all imputation and alignment modules (#9566)

authored and
vagkaratzas
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Update Infrastructural dependencies

renovate[bot]
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vagkaratzas
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Remove .view() (#9567)

LouisLeNezet
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vagkaratzas
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Bump strdrop to 0.3.1 (#9565)

fellen31
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vagkaratzas
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Remove unecessary tags (#9568)

LouisLeNezet
authored and
vagkaratzas
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latest container, with cutadapt 5.2
vagkaratzas
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new output syntax, nf-tests updated, meta updated
vagkaratzas
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meta yml lint fixed
vagkaratzas
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Merge branch 'master' into update-trimgalore
vagkaratzas
authored
trying to fix lint
vagkaratzas
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lint fix with nf-core tools 3.6.0dev
vagkaratzas
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removing TRIMGALORE versions output from the FASTQ_FASTQC_UMITOOLS_TRIMGALORE subworkflow
vagkaratzas
committed