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tcoffee_extractfrompdb test: sort file listing so "first" file is deterministic #9489

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Merged
mashehu merged 3 commits into from
Dec 3, 2025
Merged

tcoffee_extractfrompdb test: sort file listing so "first" file is deterministic #9489

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9023de2
Sort file listing so "first" file is deterministic
nathanweeks Dec 1, 2025
133aff0
Declare closure parameter per strict syntax
nathanweeks Dec 3, 2025
c868a7d
Merge branch 'master' of github.com:nf-core/modules into tcoffee_extr…
mashehu Dec 3, 2025
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2 changes: 1 addition & 1 deletion modules/nf-core/tcoffee/extractfrompdb/tests/main.nf.test
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Original file line number Diff line number Diff line change
Expand Up @@ -28,7 +28,7 @@ nextflow_process {
when {
process {
"""
input[0] = UNTAR.out.untar.collect{ meta, dir -> file(dir).listFiles().collect().first() }.map{ pdb -> [[ id: 'test'], pdb]}
input[0] = UNTAR.out.untar.collect{ meta, dir -> file(dir).listFiles().toList().sort{ it.name }.first() }.map{ pdb -> [[ id: 'test'], pdb]}
"""
}
}
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