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update regex in FASTQ_FASTQC_UMITOOLS_TRIMGALORE subworkflow, closes #8576 #8577

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Merged
SPPearce merged 1 commit into from
Jun 2, 2025
Merged

update regex in FASTQ_FASTQC_UMITOOLS_TRIMGALORE subworkflow, closes #8576 #8577

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2 changes: 1 addition & 1 deletion subworkflows/nf-core/fastq_fastqc_umitools_trimgalore/main.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ def getTrimGaloreReadsAfterFiltering(log_file) {
def filtered_reads = 0
log_file.eachLine { line ->
def total_reads_matcher = line =~ /([\d\.]+)\ssequences processed in total/
def filtered_reads_matcher = line =~ /shorter than the length cutoff[^:]+:\s([\d\.]+)/
def filtered_reads_matcher = line =~ /shorter than the length cutoff[^:]+:\s*([\d\.]+)/
if (total_reads_matcher) {
total_reads = total_reads_matcher[0][1].toFloat()
}
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