Fix genome BAM dedup log reused for transcriptome dedup #8481
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
pinin4fjords
approved these changes
May 15, 2025
Member
pinin4fjords
left a comment
pinin4fjords
left a comment
There was a problem hiding this comment.
Looks good- thanks for the fix!
famosab
pushed a commit
to famosab/modules
that referenced
this pull request
Jun 3, 2025
11 tasks
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Description
Genome BAM deduplication log (
UMI_DEDUP_GENOME.out.deduplog) is being reused for transcriptome deduplication, leading to a duplicate log inch_dedup_logand input file name collisions downstream.PR checklist