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Update raven: topic versions, stub block, sanitizeOutput#11444

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SPPearce merged 1 commit intonf-core:masterfrom
HReed1:stub-topics-raven
May 1, 2026
Merged

Update raven: topic versions, stub block, sanitizeOutput#11444
SPPearce merged 1 commit intonf-core:masterfrom
HReed1:stub-topics-raven

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@HReed1 HReed1 commented Apr 30, 2026

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool, add --profile docker,wave tests.
  • Make sure your code lints (nf-core modules lint).
  • Ensure the test suite passes (nf-test test).

Description of changes

Migrates the raven module to the nf-core v4.0.1 architecture:

  • topic: versions: Replaced legacy versions.yml file emission with dynamic eval() tuple emission on the topic: versions channel.
  • stub block: Added a deterministic stub: block for CI/CD stub-run support.
  • sanitizeOutput: Refactored all test assertions to use sanitizeOutput(process.out) per nf-test best practices.
  • meta.yml: Updated to include both output: versions_raven and topics: versions sections.

Part of the v4.0.1 standardization effort tracked in #11323.

Part of #4570

@SPPearce SPPearce added this pull request to the merge queue May 1, 2026
Merged via the queue into nf-core:master with commit 7f2af26 May 1, 2026
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2 participants