feat: add stub blocks for QC & filtering modules (#4570)#11350
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HReed1 wants to merge 1 commit intonf-core:masterfrom
Closed
feat: add stub blocks for QC & filtering modules (#4570)#11350HReed1 wants to merge 1 commit intonf-core:masterfrom
HReed1 wants to merge 1 commit intonf-core:masterfrom
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@nf-core-bot fix linting |
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Closing legacy batched PR in favor of atomic 1-PR-per-module approach with topic channel migration, as requested by reviewers. |
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Adds deterministic
stub:blocks and corresponding-stubnf-test cases for QC & filtering modules, as part of the ongoing effort to resolve #4570. Split from the original monolithic #11323 per reviewer feedback.Each stub generates placeholder output files matching the module's output channel declarations:
touch.gz) outputs useecho | gzip >versions.ymlblocks are copied 1:1 from the script blockStub blocks were generated programmatically using an AST mutation script and validated against a local test suite for output parity. For full documentation on the tooling, conventions, and methodology used, see the Nextflow contribution docs.
Modules affected (5)
fastqscanfiltlongprinseqpluspluspycoqcrasusaTests
All modules include
-stubnf-test cases withassertAll()+snapshot(process.out).match(). Snapshots generated locally vianf-test --update-snapshot.PR checklist
Contributes to #4570. Split from #11323.