Have you checked the docs?
Description of the bug
The workflow FASTQ_CREATE_UMI_CONSENSUS_FGBIO expects the input:
fasta_fai_dict // channel: [mandatory] [ val(meta), /path/to/reference/fasta, /path/to/reference/fasta.fai, /path/to/reference/dictionary ]
which is then passed to BWAMEM1_INDEX, but BWA_INDEX expects a tuple [meta, fasta].
All tests where this workflow is involved fail because of the unexpected argument.
Command used and terminal output
Relevant files
No response
System information
- nextflow 26.04.0.12031
- Desktop
- docker 29.1.3
- Ubuntu 24.04
Have you checked the docs?
Description of the bug
The workflow
FASTQ_CREATE_UMI_CONSENSUS_FGBIOexpects the input:which is then passed to
BWAMEM1_INDEX, butBWA_INDEXexpects a tuple[meta, fasta].All tests where this workflow is involved fail because of the unexpected argument.
Command used and terminal output
Relevant files
No response
System information