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{numlib}[gfbf/2025b] Basix v0.10.0, DOLFINx v0.10.0, FFCx v0.10.0, ... #24393

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{numlib}[gfbf/2025b] Basix v0.10.0, DOLFINx v0.10.0, FFCx v0.10.0, ... #24393

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@sassy-crick sassy-crick commented Oct 29, 2025 •
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(created using eb --new-pr)

Requires:

Based on the work from PR #22700 and #22422
I would suggest once this PR is merged, to apply the changes to the original PRs too.

adding easyconfigs: Basix-0.10.0-gfbf-2025b.eb, DOLFINx-0.10.0.post1-…
fd5dc8f 
…foss-2025b.eb, FFCx-0.10.0-gfbf-2025b.eb, gmsh-4.14.1-foss-2025b.eb, UFL-2025.2.0-gfbf-2025b.eb
@sassy-crick sassy-crick added new update 2025b issues & PRs related to 2025b common toolchains labels Oct 29, 2025
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Updated software gmsh-4.14.1-foss-2025b.eb

Diff against gmsh-4.14.0-foss-2024a.eb

easybuild/easyconfigs/g/gmsh/gmsh-4.14.0-foss-2024a.eb

diff --git a/easybuild/easyconfigs/g/gmsh/gmsh-4.14.0-foss-2024a.eb b/easybuild/easyconfigs/g/gmsh/gmsh-4.14.1-foss-2025b.eb
index bea84507d5..bc3f1fa6d3 100644
--- a/easybuild/easyconfigs/g/gmsh/gmsh-4.14.0-foss-2024a.eb
+++ b/easybuild/easyconfigs/g/gmsh/gmsh-4.14.1-foss-2025b.eb
@@ -1,30 +1,31 @@
 easyblock = 'CMakeMake'
 
 name = 'gmsh'
-version = '4.14.0'
+version = '4.14.1'
 
 homepage = 'https://gmsh.info/'
-description = "Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor."
+description = """Gmsh is a 3D finite element grid generator with a build-in
+CAD engine and post-processor."""
 
-toolchain = {'name': 'foss', 'version': '2024a'}
+toolchain = {'name': 'foss', 'version': '2025b'}
 toolchainopts = {'usempi': True}
 
-source_urls = ['https://%(name)s.info/src/']
-sources = ['%(name)s-%(version)s-source.tgz']
-checksums = ['db4d7da2062e9a4356a820832138ab99f97af6388bfeb21599a2eadfb0b76a28']
+source_urls = [f'https://{name}.info/src/']
+sources = [f'{name}-{version}-source.tgz']
+checksums = ['300cbb74b6fb88062aba70b1f5f31a8980177a4af415221a16ec8c0aa1d72afd']
 
 builddependencies = [
-    ('CMake', '3.29.3'),
-    ('SWIG', '4.2.1'),
+    ('CMake', '4.0.3'),
+    ('SWIG', '4.3.1'),
     ('Eigen', '3.4.0'),
 ]
 
 dependencies = [
-    ('Python', '3.12.3'),
-    ('PETSc', '3.23.5'),
-    ('SLEPc', '3.23.2'),
-    ('FLTK', '1.4.3'),
-    ('occt', '7.8.0'),
+    ('Python', '3.13.5'),
+    ('PETSc', '3.24.0'),
+    ('SLEPc', '3.24.0'),
+    ('FLTK', '1.4.4'),
+    ('occt', '7.9.1'),
 ]
 
 configopts = "-DENABLE_BUILD_SHARED=ON -DENABLE_WRAP_PYTHON=ON -DENABLE_METIS=1"
Diff against gmsh-4.12.2-foss-2023b.eb

easybuild/easyconfigs/g/gmsh/gmsh-4.12.2-foss-2023b.eb

diff --git a/easybuild/easyconfigs/g/gmsh/gmsh-4.12.2-foss-2023b.eb b/easybuild/easyconfigs/g/gmsh/gmsh-4.14.1-foss-2025b.eb
index 15c89a85b1..bc3f1fa6d3 100644
--- a/easybuild/easyconfigs/g/gmsh/gmsh-4.12.2-foss-2023b.eb
+++ b/easybuild/easyconfigs/g/gmsh/gmsh-4.14.1-foss-2025b.eb
@@ -1,30 +1,31 @@
 easyblock = 'CMakeMake'
 
 name = 'gmsh'
-version = '4.12.2'
+version = '4.14.1'
 
 homepage = 'https://gmsh.info/'
-description = "Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor."
+description = """Gmsh is a 3D finite element grid generator with a build-in
+CAD engine and post-processor."""
 
-toolchain = {'name': 'foss', 'version': '2023b'}
+toolchain = {'name': 'foss', 'version': '2025b'}
 toolchainopts = {'usempi': True}
 
-source_urls = ['https://%(name)s.info/src/']
-sources = ['%(name)s-%(version)s-source.tgz']
-checksums = ['13e09d9ca8102e5c40171d6ee150c668742b98c3a6ca57f837f7b64e1e2af48f']
+source_urls = [f'https://{name}.info/src/']
+sources = [f'{name}-{version}-source.tgz']
+checksums = ['300cbb74b6fb88062aba70b1f5f31a8980177a4af415221a16ec8c0aa1d72afd']
 
 builddependencies = [
-    ('CMake', '3.27.6'),
-    ('SWIG', '4.1.1'),
+    ('CMake', '4.0.3'),
+    ('SWIG', '4.3.1'),
     ('Eigen', '3.4.0'),
 ]
 
 dependencies = [
-    ('Python', '3.11.5'),
-    ('PETSc', '3.22.5'),
-    ('SLEPc', '3.22.2'),
-    ('FLTK', '1.3.9'),
-    ('occt', '7.8.0'),
+    ('Python', '3.13.5'),
+    ('PETSc', '3.24.0'),
+    ('SLEPc', '3.24.0'),
+    ('FLTK', '1.4.4'),
+    ('occt', '7.9.1'),
 ]
 
 configopts = "-DENABLE_BUILD_SHARED=ON -DENABLE_WRAP_PYTHON=ON -DENABLE_METIS=1"
Diff against gmsh-4.12.2-foss-2023a.eb

easybuild/easyconfigs/g/gmsh/gmsh-4.12.2-foss-2023a.eb

diff --git a/easybuild/easyconfigs/g/gmsh/gmsh-4.12.2-foss-2023a.eb b/easybuild/easyconfigs/g/gmsh/gmsh-4.14.1-foss-2025b.eb
index f698947c2e..bc3f1fa6d3 100644
--- a/easybuild/easyconfigs/g/gmsh/gmsh-4.12.2-foss-2023a.eb
+++ b/easybuild/easyconfigs/g/gmsh/gmsh-4.14.1-foss-2025b.eb
@@ -1,30 +1,31 @@
 easyblock = 'CMakeMake'
 
 name = 'gmsh'
-version = '4.12.2'
+version = '4.14.1'
 
 homepage = 'https://gmsh.info/'
-description = "Gmsh is a 3D finite element grid generator with a build-in CAD engine and post-processor."
+description = """Gmsh is a 3D finite element grid generator with a build-in
+CAD engine and post-processor."""
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2025b'}
 toolchainopts = {'usempi': True}
 
-source_urls = ['https://%(name)s.info/src/']
-sources = ['%(name)s-%(version)s-source.tgz']
-checksums = ['13e09d9ca8102e5c40171d6ee150c668742b98c3a6ca57f837f7b64e1e2af48f']
+source_urls = [f'https://{name}.info/src/']
+sources = [f'{name}-{version}-source.tgz']
+checksums = ['300cbb74b6fb88062aba70b1f5f31a8980177a4af415221a16ec8c0aa1d72afd']
 
 builddependencies = [
-    ('CMake', '3.26.3'),
-    ('SWIG', '4.1.1'),
+    ('CMake', '4.0.3'),
+    ('SWIG', '4.3.1'),
     ('Eigen', '3.4.0'),
 ]
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('PETSc', '3.20.3'),
-    ('SLEPc', '3.20.1'),
-    ('FLTK', '1.3.8'),
-    ('occt', '7.8.0'),
+    ('Python', '3.13.5'),
+    ('PETSc', '3.24.0'),
+    ('SLEPc', '3.24.0'),
+    ('FLTK', '1.4.4'),
+    ('occt', '7.9.1'),
 ]
 
 configopts = "-DENABLE_BUILD_SHARED=ON -DENABLE_WRAP_PYTHON=ON -DENABLE_METIS=1"

@sassy-crick sassy-crick mentioned this pull request Oct 29, 2025
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sassy-crick commented Oct 30, 2025

Test report by @sassy-crick
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
hp - Linux Debian GNU/Linux 12, x86_64, 11th Gen Intel(R) Core(TM) i7-1185G7 @ 3.00GHz, Python 3.11.2
See https://gist.github.com/sassy-crick/5a41872b8575eed6f7ca5d4d8a68f837 for a full test report.

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sassy-crick commented Oct 30, 2025

@boegelbot please test @ jsc-zen3

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boegelbot commented Oct 30, 2025

@sassy-crick: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=24393 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_24393 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 8595

Test results coming soon (I hope)...

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Test report by @boegelbot
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
jsczen3c2.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/b70f8d69cf8e2d3af7cb1667bc029722 for a full test report.

Thyre
Thyre reviewed Oct 30, 2025
View reviewed changes
easybuild/easyconfigs/b/Basix/Basix-0.10.0-gfbf-2025b.eb
Comment on lines 16 to 19
builddependencies = [
('CMake', '3.31.8'),
('scikit-build-core', '0.11.5'),
]
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Suggested change
builddependencies = [
('CMake', '3.31.8'),
('scikit-build-core', '0.11.5'),
]
builddependencies = [
('scikit-build-core', '0.11.5'),
]

scikit-build-core already has a dependency on CMake 4.0. No need to provide CMake 3.31.8 here. In addition, this creates a conflict, since we load two different CMake versions.

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True. I did not check for that. I have addressed that now and will upload it when I done all the suggested changes. Thanks!

easybuild/easyconfigs/b/Basix/Basix-0.10.0-gfbf-2025b.eb Outdated
dependencies = [
('Python', '3.13.5'),
('SciPy-bundle', '2025.07'),
('pybind11', '3.0.0'),
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This should be a builddependency. I don't think Basix will build additional code with pybind11 on the fly.

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That makes sense. I have changed it and will upload it once I am done with the other changes. Thanks!

easybuild/easyconfigs/d/DOLFINx/DOLFINx-0.10.0-foss-2025b.eb Outdated
checksums = ['43ebfaf89fcb7809b11b94ba3e8ea8e56a99d724a45c51e99e39a35c577c441e']

builddependencies = [
('CMake', '3.31.8'),
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Suggested change
('CMake', '3.31.8'),

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I have changed it and will upload it once I am done with the other changes. Thanks!

easybuild/easyconfigs/f/FFCx/FFCx-0.10.0-gfbf-2025b.eb Outdated
checksums = ['fa27e2dc68988cbf9aca537eb5a58483f75cc719c1a383713b7f8cca49844ff9']

builddependencies = [
('CMake', '3.31.8'),
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Suggested change
('CMake', '3.31.8'),

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Is it not better to explicitly load cmake ? Just wondering.

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I have changed it and will upload it once I am done with the other changes. Thanks!

easybuild/easyconfigs/f/FFCx/FFCx-0.10.0-gfbf-2025b.eb Outdated
dependencies = [
('Python', '3.13.5'),
('SciPy-bundle', '2025.07'),
('pybind11', '3.0.0'),
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builddependency

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I have changed it and will upload it once I am done with the other changes. Thanks!

easybuild/easyconfigs/g/gmsh/gmsh-4.14.1-foss-2025b.eb Outdated
checksums = ['300cbb74b6fb88062aba70b1f5f31a8980177a4af415221a16ec8c0aa1d72afd']

builddependencies = [
('CMake', '3.31.8'),
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Suggested change
('CMake', '3.31.8'),
('CMake', '4.0.3'),

Please use this version by default. If this really doesn't work, then we should drop to the older version.

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I have changed it and will upload it once I am done with the other changes. Thanks!

easybuild/easyconfigs/u/UFL/UFL-2025.2.0-gfbf-2025b.eb Outdated
checksums = ['3d7590a78c280a12d822d4f4e7bd49e081ca260a2a3d442f1bf31dd23b79e1bf']

builddependencies = [
('CMake', '3.31.8'),
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Suggested change
('CMake', '3.31.8'),

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I have changed it and will upload it once I am done with the other changes. Thanks!

easybuild/easyconfigs/u/UFL/UFL-2025.2.0-gfbf-2025b.eb Outdated
dependencies = [
('Python', '3.13.5'),
('SciPy-bundle', '2025.07'),
('pybind11', '3.0.0'),
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builddependency

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I have changed it and will upload it once I am done with the other changes. Thanks!

@sassy-crick sassy-crick changed the title {numlib}[gfbf/2025b] Basix v0.10.0, DOLFINx v0.10.0.post1, FFCx v0.10.0, ... {numlib}[gfbf/2025b] Basix v0.10.0, DOLFINx v0.10.0, FFCx v0.10.0, ... Oct 30, 2025
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sassy-crick commented Oct 30, 2025

@boegelbot please test @ jsc-zen3

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boegelbot commented Oct 30, 2025

@sassy-crick: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=24393 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_24393 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 8601

Test results coming soon (I hope)...

- notification for comment with ID 3468521854 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

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sassy-crick commented Oct 30, 2025

Test report by @sassy-crick
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
hp - Linux Debian GNU/Linux 12, x86_64, 11th Gen Intel(R) Core(TM) i7-1185G7 @ 3.00GHz, Python 3.11.2
See https://gist.github.com/sassy-crick/25904fa096822bb34517d8f3b6a2b4da for a full test report.

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boegelbot commented Oct 30, 2025

Test report by @boegelbot
SUCCESS
Build succeeded for 5 out of 5 (5 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/3819e376162c89ed69a8f46a7b64103d for a full test report.

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Thyre commented Oct 30, 2025

Looks good to me now at first glance, but I'm not familiar at all with the packages 😄

That's something to the maintainers to decide...

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Thyre commented Nov 5, 2025

Test report by @Thyre
SUCCESS
Build succeeded for 15 out of 15 (total: 54 mins 30 secs) (5 easyconfigs in total)
ZAM054 - Linux Zorin OS 18, x86_64, 12th Gen Intel(R) Core(TM) i7-1260P (skylake), 1 x NVIDIA NVIDIA GeForce MX550, 580.95.05, Python 3.12.3
See https://gist.github.com/Thyre/c524d32e971df82df86c7043a4e6c746 for a full test report.

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Thyre commented Nov 5, 2025

Test report by @Thyre
SUCCESS
Build succeeded for 8 out of 8 (5 easyconfigs in total)
jrc0900.jureca - Linux Rocky Linux 9.6, AArch64, ARM UNKNOWN (neoverse_v2), 1 x NVIDIA NVIDIA GH200 480GB, 580.95.05, Python 3.9.21
See https://gist.github.com/Thyre/deff4e17b96f242c9a4d74d3bc06c0bb for a full test report.

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