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Fix numpy and altair version issues #1870

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Merged
nfahlgren merged 2 commits into from
Jan 28, 2026
+4 −4
Merged

Fix numpy and altair version issues #1870

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138059d
Remove keyword argument to generalize numpy cross-version compatibility
nfahlgren Jan 28, 2026
8dcd40f
Update numpy and altair pinnings
nfahlgren Jan 28, 2026
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4 changes: 2 additions & 2 deletions environment.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ name: plantcv
dependencies:
- python=3.13
- matplotlib>=1.5
- numpy>=2
- numpy>=1.26
- pandas
- python-dateutil
- scipy<1.16
Expand All @@ -23,7 +23,7 @@ dependencies:
- ipympl
- nodejs
- jupyterlab
- altair
- altair<6
- vl-convert-python
- git
- flyr
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2 changes: 1 addition & 1 deletion plantcv/plantcv/threshold/threshold_methods.py
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Expand Up @@ -323,7 +323,7 @@ def calc_texture(inputs):
float
Texture value
"""
inputs = np.reshape(inputs, newshape=[ksize, ksize])
inputs = np.reshape(inputs, (ksize, ksize))
inputs = inputs.astype(np.uint8)
# Greycomatrix takes image, distance offset, angles (in radians), symmetric, and normed
# http://scikit-image.org/docs/dev/api/skimage.feature.html#skimage.feature.graycomatrix
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2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -13,7 +13,7 @@ license = {file = "LICENSE"}
dynamic = ["version"]
dependencies = [
"matplotlib >= 1.5",
"numpy >= 2",
"numpy >= 1.26",
"pandas",
"python-dateutil",
"scipy <1.16",
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