feat: switch nf-core module to BioContainers #34
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- Update nf-core module to use BioContainers instead of ghcr.io - Remove jq dependency, use Python for JSON parsing - Update release workflow to verify BioContainers URLs - Sync all nf-core module files with nf-core/modules PR 🤖 Generated with [Claude Code](https://claude.ai/code)
- Update version-sync.sh to extract version from biocontainers pattern - Add docker profile to nf-test config - Fix sed replacement pattern in CI workflow 🤖 Generated with [Claude Code](https://claude.ai/code) Co-Authored-By: Claude <[email protected]>
🤖 Generated with [Claude Code](https://claude.ai/code) Co-Authored-By: Claude <[email protected]>
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Summary
Changes
nf-core/modules/vcfpgloader/load/main.nf- BioContainers URLs, Python JSON parsingnf-core/modules/vcfpgloader/load/environment.yml- Remove jq.github/workflows/release.yml- Update verification for BioContainerspyproject.toml- Update bump-my-version for new URL patternWhy
Per PR feedback on nf-core/modules#9579, modules should use BioContainers (auto-built from bioconda) instead of personal container registries.
🤖 Generated with Claude Code