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Motif Threshold plot#195

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luiztauffer merged 5 commits intodevfrom
motif-threshold-plot
Sep 4, 2025
Merged

Motif Threshold plot#195
luiztauffer merged 5 commits intodevfrom
motif-threshold-plot

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@luiztauffer luiztauffer commented Sep 1, 2025

WIP

usage:

from vame.visualization import plot_motif_thresholding

plot_motif_thresholding(config_data)

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@katiekly the old PR #157 was too out of date with current dev, and was wrongly pointing to main as target. I brought your function to this new PR, in line with the current state of the code.

@luiztauffer luiztauffer marked this pull request as draft September 1, 2025 14:08
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codecov bot commented Sep 1, 2025

Codecov Report

❌ Patch coverage is 21.42857% with 22 lines in your changes missing coverage. Please review.

Files with missing lines Patch % Lines
src/vame/visualization/motif.py 18.51% 22 Missing ⚠️
Files with missing lines Coverage Δ
src/vame/visualization/__init__.py 100.00% <100.00%> (ø)
src/vame/visualization/motif.py 18.51% <18.51%> (ø)

... and 1 file with indirect coverage changes

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@luiztauffer luiztauffer marked this pull request as ready for review September 4, 2025 10:44
@luiztauffer luiztauffer merged commit 8ef6c54 into dev Sep 4, 2025
3 of 4 checks passed
@luiztauffer luiztauffer deleted the motif-threshold-plot branch September 4, 2025 10:44
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