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HDF5 WriteField: Fix Wrong Doc String and Index #690

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Merged
psychocoderHPC merged 1 commit into from
Feb 12, 2015
Merged

HDF5 WriteField: Fix Wrong Doc String and Index #690

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18 changes: 9 additions & 9 deletions src/picongpu/include/plugins/hdf5/writer/Field.hpp
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Original file line number Diff line number Diff line change
Expand Up @@ -60,8 +60,8 @@ struct Field
std::vector<std::string> name_lookup;
{
const std::string name_lookup_tpl[] = {"x", "y", "z", "w"};
for (uint32_t d = 0; d < nComponents; d++)
name_lookup.push_back(name_lookup_tpl[d]);
for (uint32_t n = 0; n < nComponents; n++)
name_lookup.push_back(name_lookup_tpl[n]);
}

/*data to describe source buffer*/
Expand Down Expand Up @@ -99,33 +99,33 @@ struct Field
typedef DataBoxDim1Access<NativeDataBoxType > D1Box;
D1Box d1Access(dataBox.shift(field_guard), field_no_guard);

for (uint32_t d = 0; d < nComponents; d++)
for (uint32_t n = 0; n < nComponents; n++)
{
/* copy data to temp array
* tmpArray has the size of the data without any offsets
*/
for (size_t i = 0; i < tmpArraySize; ++i)
{
tmpArray[i] = d1Access[i][d];
tmpArray[i] = d1Access[i][n];
}

std::stringstream datasetName;
datasetName << "fields/" << name;
if (nComponents > 1)
datasetName << "/" << name_lookup.at(d);
datasetName << "/" << name_lookup.at(n);

Dimensions sizeSrcData(1, 1, 1);

for (uint32_t i = 0; i < simDim; ++i)
for (uint32_t d = 0; d < simDim; ++d)
{
sizeSrcData[i] = field_no_guard[i];
sizeSrcData[d] = field_no_guard[d];
}

params->dataCollector->writeDomain(params->currentStep, /* id == time step */
splashGlobalDomainSize, /* total size of dataset over all processes */
splashGlobalOffsetFile, /* write offset for this process */
splashType, /* data type */
simDim, /* NDims of the field data (scalar, vector, ...) */
simDim, /* NDims spatial dimensionality of the field */
splash::Selection(sizeSrcData), /* data size of this process */
datasetName.str().c_str(), /* data set name */
splash::Domain(
Expand All @@ -140,7 +140,7 @@ struct Field

params->dataCollector->writeAttribute(params->currentStep,
ctDouble, datasetName.str().c_str(),
"sim_unit", &(unit.at(d)));
"sim_unit", &(unit.at(n)));
}
__deleteArray(tmpArray);
}
Expand Down