query stats of infected coronavirus cases

Unified COVID-19 Dataset

Programmatically interact with the GISAID database.

R package to obtain and analyze live data from the nCOVID19 coronavirus

Analysis and visualization of Taiwan’s COVID-19 data

Interoperable secondary data for research on the new COVID-19 coronavirus sars-cov-2

Im Datensatz "Abwassersurveillance AMELAG" des Robert Koch-Instituts und Umweltbundesamts werden Daten aus der Überwachung von Infektionserregern im Abwasser bereitgestellt. Die Daten zur SARS-CoV-2-Viruslast werden seit Februar 2022 in einem bundesweiten Netzwerk von Kläranlagen, Laboren und Behörden erhoben. Seitdem wurden die Daten um die Vir...

🦠 Exploring COVID-19 data

This is the raw data and code repository of the SARS-ANI project on SARS-CoV-2 events in animals.

Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nature Communications (2022).

Supplementary scripts for Nelson et al. (2020) paper on ORF3d

Data analysis for single-cell RNA-seq of BAL macrophages & stimulated monocytes

An infectious disease kinetics model of SARS-CoV-2 virus infection in humans with population migrating details for predicts the plague progress in a administrative divislon.

Data used for analyses in "Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China" (Lu et al., Cell, 2020) https://doi.org/10.1016/j.cell.2020.04.023

Codes for SARS-CoV-2-human contactome

Pipeline used to generate variant effect predictions for all possible SARS-CoV-2 substitutions

Translate and Illustrate SARS-CoV-2 Pango Lineages

COVID-19 mortality risk assessment among various age groups using phylogenomic analysis

Code used in the analysis of the effective reproduction number and the dispersion parameter of SARS-CoV-2.

Code and Data from our SARS-CoV-2 manuscript