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cell-cell-interaction

Here are 5 public repositories matching this topic...

theislab / ncem

Learning cell communication from spatial graphs of cells

tensorflow glm cvae encoder-decoder-model gnn scanpy cell-cell-interaction cell-cell-communication squidpy

Updated Jan 15, 2024
Python

earmingol / cell2cell

User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins

machine-learning bioinformatics rna-seq computational-biology rnaseq single-cell single-cell-rna-seq bulk-rna-seq sc-rna-seq cell-cell-interaction cell-cell-communication

Updated Nov 2, 2025
Python

Mr-Milk / SpatialTis

Spatial analysis toolkit for single cell multiplexed tissue data

tissue network spatial-analysis hotspot single-cell heterogeneity spatial-distribution cell-cell-interaction spaital-analysis imaging-mass-cytometry multiplexed-ion-beam-imaging spatial-omics

Updated Sep 2, 2024
Python

ma-compbio / Steamboat

Steamboat is an interpretable framework to study multiscale cellular interactions in tissues

single-cell attention-model self-supervised-learning spatial-transcriptomics cell-cell-interaction

Updated Oct 8, 2025
Python

Ninavd / tumor-dynamics-abm

Project on ABM tumor growth for the Agent-Based Modeling course at the UvA 2023-2024

agent-based-modeling tumor-evolution tumor-growth cell-cell-interaction tumor-growth-dynamics

Updated Oct 10, 2024
Python

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