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St. Jude Children's Research Hospital

Finding Cures, Saving Children.

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  1. learngenomics.dev learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    JavaScript 384 36

  2. ROSE ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    Python 57 16

  3. CICERO CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    Perl 41 22

  4. proteinpaint proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    JavaScript 39 12

  5. ChIPseqSpikeInFree ChIPseqSpikeInFree Public

    A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

    R 34 13

  6. RNAIndel RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    Python 23 8

Repositories

Showing 10 of 51 repositories
  • proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    stjude/proteinpaint’s past year of commit activity
    JavaScript 39 12 108 (1 issue needs help) 4 Updated Nov 21, 2025
  • RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    stjude/RNAIndel’s past year of commit activity
    Python 23 Apache-2.0 8 0 0 Updated Nov 21, 2025
  • EasyFiji Public

    Source code for easyfiji project (maintain by Aaron Taylor and Chen LI)

    stjude/EasyFiji’s past year of commit activity
    Java 0 MIT 0 0 0 Updated Nov 21, 2025
  • icore-image Public
    stjude/icore-image’s past year of commit activity
    Python 4 0 0 1 Updated Nov 20, 2025
  • CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    stjude/CICERO’s past year of commit activity
    Perl 41 22 7 0 Updated Nov 17, 2025
  • ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    stjude/ROSE’s past year of commit activity
    Python 57 16 3 0 Updated Nov 14, 2025
  • SICER2 Public

    sicer2

    stjude/SICER2’s past year of commit activity
    Python 0 MIT 2 3 0 Updated Nov 14, 2025
  • fuzzion2_patgen Public

    tools for creating patterns for use with fuzzion2

    stjude/fuzzion2_patgen’s past year of commit activity
    Perl 0 Apache-2.0 0 0 0 Updated Nov 5, 2025
  • Semisupervised_Learning Public

    Development of an approach using semisupervised learning and multinomial logistic regression to label methylation samples to boost

    stjude/Semisupervised_Learning’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 14, 2025
  • HiLOW Public

    HiC Looping Organization Workflow

    stjude/HiLOW’s past year of commit activity
    WDL 1 0 1 1 Updated Jul 10, 2025

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