Link to raw data is not working

[mstemmer]

Hi,

I was trying to work through the input data formatting and found that the links to the raw data to some of the sample datasets do not work. E.g.:
s3://czi.starfish.data.public/browse/raw/20180820/merfish_u2os/ OR
s3://spacetx.starfish.data.public/browse/raw/seqfish/

In order to better understand the entire process, it would be very helpful to have a look at these datasets and run the conversion locally. Did the link change or are the data not available anymore?

All the best,
Manuel.

[ankitbioinfo]

Hi Manuel,

Have you got any progress to get the manual data. I am bit confused about the auxilliary data dots. How to get the reference dot image? I am kind of working on seqFISH pipeline. In the example blob detection does not work without reference image. Any Idea what is the problem?

[sebgoti]

Hey @ankitbioinfo, if you do not have the reference dot image, have you tried to do a projection of all the channels and use that as a reference? Also, it would be helpful if you could mention to which data from the tutorial you are referring to.