Intercropping: Multiple Accessions per Plot

[dwaring87]

Description

This adds intercropping support by allowing multiple accessions to be associated with a single plot

Basically, this allows additional Accessions to be linked to plots using a new intercrop_plot_of stock relationship type in addition to the usual 1:1 link with the plot_of relationship type. The changes allow for any number of intercrop_plot_of stock relationships to be made while maintaining the assumption that only one plot_of relationship exists.

DB Patches:

• adds an intercrop_plot_of stock relationship type
• updates the materialized_phenoview matview to include intercrop accessions (DB Patch Diff) - this uses the newer/correct traits matview definition from fix the traits view again. #5910
• updates the materialized_phenotype_jsonb_table matview to include intercrop accessions (DB Patch Diff)

Changes:

• Trial Upload: adds an optional column of intercrop_accession_name which allows additional Accessions to be associated with a plot. This can be a comma-separated list or the column can be included more than once to allow for more than one intercropped accessions.
• Data Download: adds intercropGermplasmDbId and intercropGermplasmName columns that include the ID and name of the intercropped accessions (comma-separated if more than one)
• Trial Detail Page:
  • updated table of Accessions (includes Species column)
  • updated table of Plots (includes all Accessions in Plot)
    • also updated to include plot number and all Accession synonyms (instead of just one)
  • updated field layout to include all Accessions
    • in the tool-tip when hovering over a plot on the visual layout
    • included in the layout download file
• Search Wizard: all Accessions are included when you select a Trial or Plot

Future Work:

• Add Tests
• Update Manual
• Add support to Trial Design tool?
• Handle Subplots (should the Accessions associated with subplots be all of the Accessions or a specific one?)
• Handle Plants (the user would need to specify which Accession the plant is)

Fixes #5308, Fixes #4690

Checklist

• Refactoring only
• Documentation only
• Fixture update only
• Bug fix
  • The relevant issue has been closed.
  • Further work is required.
• New feature
  • Relevant tests have been created and run.
  • Data was added to the fixture
    • Data was added via a patch in /t/data/fixture/patches/.
  • User-Facing Change
    • The user manual in /docs has been updated.
  • Any new Perl has been documented using perldoc.
  • Any new JavaScript has been documented using JSDoc.
  • Any new legacy JavaScript has been moved from /js to /js/source/legacy.