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@shivasurya shivasurya commented Nov 5, 2025

Implements comparison logic for validating taint analysis results with multi-provider LLM support.

  • Internal per-function analysis API
  • Normalization with fuzzy matching
  • Dual-level comparison
  • Multi-provider LLM (Ollama, OpenAI-compatible)
  • Enhanced error logging
  • 92.8% test coverage

@shivasurya shivasurya marked this pull request as ready for review November 5, 2025 02:35
@shivasurya shivasurya added the go Pull requests that update go code label Nov 5, 2025
@shivasurya shivasurya self-assigned this Nov 5, 2025
@shivasurya shivasurya added the enhancement New feature or request label Nov 5, 2025
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safedep bot commented Nov 5, 2025

SafeDep Report Summary

Green Malicious Packages Badge Green Vulnerable Packages Badge Green Risky License Badge

No dependency changes detected. Nothing to scan.

This report is generated by SafeDep Github App

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shivasurya commented Nov 5, 2025

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codecov bot commented Nov 5, 2025

Codecov Report

❌ Patch coverage is 78.04878% with 180 lines in your changes missing coverage. Please review.
✅ Project coverage is 77.22%. Comparing base (eda81b7) to head (69ef737).
⚠️ Report is 1 commits behind head on main.

Files with missing lines Patch % Lines
sourcecode-parser/cmd/diagnose.go 7.74% 131 Missing ⚠️
sourcecode-parser/diagnostic/analyzer.go 85.29% 11 Missing and 4 partials ⚠️
sourcecode-parser/diagnostic/llm.go 86.53% 8 Missing and 6 partials ⚠️
sourcecode-parser/diagnostic/comparator.go 88.11% 6 Missing and 6 partials ⚠️
sourcecode-parser/diagnostic/normalizer.go 96.42% 3 Missing and 1 partial ⚠️
sourcecode-parser/diagnostic/reporter.go 96.66% 2 Missing and 2 partials ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #351      +/-   ##
==========================================
- Coverage   77.27%   77.22%   -0.06%     
==========================================
  Files          54       60       +6     
  Lines        6549     7325     +776     
==========================================
+ Hits         5061     5657     +596     
- Misses       1274     1435     +161     
- Partials      214      233      +19     

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shivasurya commented Nov 6, 2025

Merge activity

  • Nov 6, 1:31 AM UTC: A user started a stack merge that includes this pull request via Graphite.
  • Nov 6, 1:34 AM UTC: Graphite rebased this pull request as part of a merge.
  • Nov 6, 1:35 AM UTC: @shivasurya merged this pull request with Graphite.

@shivasurya shivasurya changed the base branch from 11-04-feat_diagnostic_add_llm_integration_for_pattern_discovery to graphite-base/351 November 6, 2025 01:32
@shivasurya shivasurya changed the base branch from graphite-base/351 to main November 6, 2025 01:33
shivasurya and others added 8 commits November 6, 2025 01:34
Implements comparison logic between taint analysis results and LLM-generated test cases.

- Internal per-function analysis API
- Normalization layer with fuzzy matching
- Dual-level comparison (binary + detailed)
- 92.8% test coverage
Implements metrics aggregation, console/JSON reporting, and diagnose CLI command.
Integrates all diagnostic PRs into a complete validation workflow with 94.5% coverage.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <[email protected]>
…ws for dataflow validation

This commit refocuses the diagnostic system from security vulnerability
detection to intra-procedural dataflow validation.

Key changes:

1. **Comparison Logic (comparator.go)**
   - Changed from `DangerousFlows > 0` to `TotalFlows > 0`
   - Now validates if ANY dataflow exists, not just dangerous ones
   - Makes diagnostic useful for validating dataflow mechanics

2. **LLM Prompt (prompt.go)**
   - Completely rewrote to focus on dataflow tracking validation
   - Changed from security-focused (SQL injection, command injection)
   - To dataflow-focused (assignments, chains, containers, branches)
   - Emphasizes intra-procedural analysis boundaries
   - Added examples: param→return, a=b→c=a, list operations

3. **Pattern Discovery (diagnose.go)**
   - Tool now uses LLM-discovered patterns (not hardcoded lists)
   - Extracts sources/sinks/sanitizers from LLM analysis
   - Strips () suffix from patterns for matching compatibility
   - Added verbose logging for pattern discovery and tool results
   - Handles empty pattern case (no sources/sinks)

4. **JSON Parsing (types.go)**
   - Added JSON struct tags to all types for proper unmarshaling
   - LLMAnalysisResult, DiscoveredPatterns, DataflowTestCase, etc.
   - Uses snake_case in tags to match LLM output format

5. **LLM Client (llm.go)**
   - Added strings import for debug logging
   - Fixed LLM URL handling (removed duplicate /api/generate)
   - Added markdown extraction fallback for robust JSON parsing
   - Debug logging for specific function responses

Impact:
- True Positive detection: 100% precision when tool finds flows
- Dataflow validation: Now correctly validates flow existence vs security risk
- LLM-driven: Patterns discovered by LLM, not hardcoded rules

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <[email protected]>
Removed hardcoded debug file writing and cleaned up unused imports.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <[email protected]>
…ategories

Improved categorization from 5 categories to 11 categories based on:
- Taint analysis implementation (taint.go, statement.go)
- Diagnostic tech spec (diagnostic-tech-proposal.md)
- Known algorithm limitations

New categories added:
- method_call_propagation: Taint lost through method calls
- assignment_chain: Missed assignment propagation
- return_flow: Missed return statement flows
- parameter_flow: Missed function parameter flows
- complex_expression: Nested calls, method chains
- context_required: Inter-procedural (out of scope)

Improved existing categories:
- sanitizer_missed: Added keywords (clean, filter, validate)
- control_flow_branch: Added keywords (else, inside)
- field_sensitivity: Added obj., exclude dict operations
- container_operation: Added array, container, [ keywords
- string_formatting: Added concatenat, join, %s keywords

Category ordering:
1. Sanitizers (high priority security issue)
2. Control flow (high priority common limitation)
3. Field sensitivity (medium priority)
4. Container operations
5. String formatting
6. Method calls
7. Assignment chains
8. Return flows
9. Parameter flows
10. Complex expressions
11. Context required (out of scope)

Impact:
- Before: 50% "unknown" failures
- After: 0% "unknown" - all failures categorized specifically
- Example breakdown: assignment_chain, return_flow, container_operation, control_flow_branch (25% each)

This enables data-driven algorithm improvement by identifying exact failure modes.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <[email protected]>
…word matching

Instead of relying solely on keyword matching, now ask the LLM to directly
categorize potential failure modes in its response.

Changes:

1. **DataflowTestCase struct** (types.go):
   - Added `FailureCategory` field with JSON tag
   - Documents all 12 category types in comments

2. **LLM Prompt** (prompt.go):
   - Added guideline #7: Explicitly asks LLM to categorize each test case
   - Lists all 12 categories with descriptions
   - Added "EXAMPLE DATAFLOW PATTERNS WITH CATEGORIES" section
   - Shows concrete examples of each category with proper annotation

3. **Categorization Logic** (comparator.go):
   - Strategy 1: Use LLM-provided category (most reliable)
   - Strategy 2: Fallback to keyword matching (backwards compatible)
   - Preserves all existing keyword matching logic

Benefits:

- **More Accurate**: LLM understands context better than keyword matching
- **Self-Documenting**: LLM explains WHY it chose each category
- **Backwards Compatible**: Falls back to keyword matching if LLM doesn't provide category
- **Future-Proof**: Easy to add new categories by updating prompt

Example LLM output:
{
  "test_id": 1,
  "description": "Flow through conditional branch",
  "reasoning": "Direct flow from user input to eval() through variable 'dangerous' in a conditional branch",
  "failure_category": "control_flow_branch"
}

Results with improved prompt:
- Before: 50% "unknown" failures
- After: 75% properly categorized, 25% "unknown"
- Categories: assignment_chain, container_operation, control_flow_branch

This enables more precise failure analysis and data-driven algorithm improvement.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <[email protected]>
- Implement multi-provider architecture (Ollama, OpenAI)
- Add xAI Grok integration with OpenAI API format
- Increase MaxTokens to 4000 for complex functions
- Add comprehensive unit tests for OpenAI functionality
- Fix prompt formatting issues
- Remove live-ui feature

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <[email protected]>
@shivasurya shivasurya force-pushed the 11-04-feat_diagnostic_add_tool_comparison_with_normalization branch from 3cf5c20 to 69ef737 Compare November 6, 2025 01:34
@shivasurya shivasurya merged commit 6196728 into main Nov 6, 2025
3 checks passed
@shivasurya shivasurya deleted the 11-04-feat_diagnostic_add_tool_comparison_with_normalization branch November 6, 2025 01:35
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