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@scmcphub

scmcphub

Welcome to scmcphub!

scmcphub is a community dedicated to developing and maintaining natural language interfaces for single-cell omics data analysis using MCP.

Our platform's vision is to empower every researcher to perform single-cell data analysis through natural language interactions, making advanced computational biology accessible to all scientists regardless of their programming expertise.

Visit our website: http://scmcphub.org/

Visti the docs: https://docs.scmcphub.org/

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  1. scmcp scmcp Public

    An MCP server for scRNA-Seq analysis with natural language!

    Python 15 5

Repositories

Showing 10 of 12 repositories
  • scmcp-shared Public

    A shared function library for scmcphub

    scmcphub/scmcp-shared’s past year of commit activity
    Python 1 BSD-3-Clause 4 0 0 Updated Nov 29, 2025
  • sclab Public Forked from ThinkInAIXYZ/deepchat

    sclab - A smart assistant that connects powerful AI to your single cell world

    scmcphub/sclab’s past year of commit activity
    TypeScript 0 Apache-2.0 653 0 0 Updated Aug 29, 2025
  • biomarker-mcp Public
    scmcphub/biomarker-mcp’s past year of commit activity
    Python 2 0 1 0 Updated Aug 20, 2025
  • docs Public
    scmcphub/docs’s past year of commit activity
    MDX 0 0 0 0 Updated Jul 23, 2025
  • scmcp Public

    An MCP server for scRNA-Seq analysis with natural language!

    scmcphub/scmcp’s past year of commit activity
    Python 15 BSD-3-Clause 5 4 0 Updated Jul 10, 2025
  • scanpy-mcp Public

    MCP server for scanpy

    scmcphub/scanpy-mcp’s past year of commit activity
    Python 2 BSD-3-Clause 3 1 (1 issue needs help) 0 Updated Jun 27, 2025
  • liana-mcp Public

    Natural language interface for scRNA-Seq analysis with Liana through MCP

    scmcphub/liana-mcp’s past year of commit activity
    Python 1 0 0 0 Updated Jun 27, 2025
  • infercnv-mcp Public

    MCP server for CNV analysis using infercnv

    scmcphub/infercnv-mcp’s past year of commit activity
    Python 1 1 0 0 Updated Jun 27, 2025
  • decoupler-mcp Public

    MCP server for biological activities analysis using decoupler

    scmcphub/decoupler-mcp’s past year of commit activity
    Python 4 3 0 0 Updated Jun 27, 2025
  • cellrank-mcp Public

    MCP server for trajectory inference using cellrank

    scmcphub/cellrank-mcp’s past year of commit activity
    Python 2 1 0 0 Updated Jun 27, 2025

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