Porechop v0.2.4

• Fix for barcode orientation check
• Tweak adapter search logic

Porechop v0.2.3

• Support for 1D^2 adapters
• Small sequence fixes for full native barcoding adapter sequences
• New option --no_split to skip the middle-adapter search (can make Porechop much faster to run)
• New option --discard_unassigned to not bother saving 'none' reads when demultiplexing barcodes (thanks @jvolkening)
• Include PCR tail adapter sequences (thanks @jvolkening)

Porechop v0.2.2

A few enhancements and fixes:

• Can take directories as input, in which case it will recursively search for fastq files in that directory.
• If the input directory is an Albacore output directory and Porechop is run with barcode demultiplexing, then it will only bin reads for which both Albacore and Porechop agree on the barcode.
• New --untrimmed option to allow for Porechop demultiplexing without adapter trimming (thanks to @nickloman and @zibraproject for the PR).
• If pigz is available, it will use that to compress the final reads instead of gzip (thanks to @asl for the idea).
• Better output with progress indicators (thanks to @gringer for the idea).

Porechop v0.2.1

• Various improvements for barcode demultiplexing, including support for rapid barcode and PCR barcode kits.
• Additional adapter sequences added.

Porechop v0.2.0

Added barcode demultiplexing

Porechop v0.1.0

The first release of Porechop!