test sphinx mapping to networkx by raybellwaves · Pull Request #4323 · rapidsai/cugraph

raybellwaves · 2024-04-09T04:42:45Z

I'll report back if it get to render locally. Ran out of mem building the library on my ec2 machine (g5.2xlarge: 32 Gb RAM) but I did just build cudf. I'll try again soon.

~~Also brainstorming here and I probably should upstream this to the rapids CI process. Would be nice to have /ok to test docs which just builds the docs for this PR~~ created https://github.com/nv-gha-runners/nvidia-runners/issues/25

I tried building the docs locally and got

WARNING: [autosummary] failed to import cugraph.jaccard_w.
Possible hints:
* AttributeError: module 'cugraph' has no attribute 'jaccard_w'
* ImportError: 
* ModuleNotFoundError: No module named 'cugraph.jaccard_w'
WARNING: [autosummary] failed to import cugraph.overlap_w.
Possible hints:
* ModuleNotFoundError: No module named 'cugraph.overlap_w'
* ImportError: 
* AttributeError: module 'cugraph' has no attribute 'overlap_w'
WARNING: [autosummary] failed to import cugraph.sorensen_w.
Possible hints:
* ModuleNotFoundError: No module named 'cugraph.sorensen_w'
* ImportError: 
* AttributeError: module 'cugraph' has no attribute 'sorensen_w'

Think this comes from

cugraph/docs/cugraph/source/api_docs/cugraph/link_prediction.rst

Line 14 in abe69c0

cugraph.jaccard_w

but I may have messed up my build

copy-pr-bot · 2024-04-09T04:42:47Z

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rlratzel · 2024-04-09T18:52:08Z

Thanks, @raybellwaves ! The errors you saw are due to this PR, which (intentionally) removed those APIs, but I missed the .rst files. I (or @acostadon ?) will open a PR to take care of that (I created #4330).

rlratzel · 2024-04-09T18:52:39Z

/ok to test

acostadon · 2024-04-09T20:02:47Z

PR #4331 fixes this. It is in review now.

raybellwaves · 2024-04-11T21:21:49Z

Had a couple of mins to try and build the docs again. Now getting the Traceback below.

Believe i'm missing pylibcugraphops.operators.mha_gat_n2n_bwd, pylibcugraphops.operators.mha_gat_n2n_efeat_bwd, pylibcugraphops.operators.mha_gat_n2n_efeat_fwd, pylibcugraphops.operators.mha_gat_n2n_fwd which are called in https://github.com/rapidsai/cugraph/blob/branch-24.06/docs/cugraph/source/api_docs/cugraph-ops/python/operators.rst?plain=1#L50#L53 I see those methods in pylibcugraphops 24.02 (https://colab.research.google.com/drive/1Yev1vPUbTVxXMzSrcKnraSCb5KtrFMwF?usp=sharing). But missing in 24.06.00a9. Looks like they been updated to include precision e.g. ["mha_gat_n2n_fwd_bf16_fp32", "mha_gat_n2n_fwd_fp16_fp32", "mha_gat_n2n_fwd_fp32_fp32"]

[autosummary] generating autosummary for: api_docs/cugraph-dgl/cugraph_dgl.rst, api_docs/cugraph-ops/c_cpp/index.rst, api_docs/cugraph-ops/index.rst, api_docs/cugraph-ops/python/dimenet.rst, api_docs/cugraph-ops/python/graph_types.rst, api_docs/cugraph-ops/python/index.rst, api_docs/cugraph-ops/python/operators.rst, api_docs/cugraph-ops/python/pytorch.rst, api_docs/cugraph-pyg/cugraph_pyg.rst, api_docs/cugraph/centrality.rst, ..., tutorials/index.rst, wholegraph/basics/index.rst, wholegraph/basics/wholegraph_intro.md, wholegraph/basics/wholememory_implementation_details.md, wholegraph/basics/wholememory_intro.md, wholegraph/index.rst, wholegraph/installation/container.md, wholegraph/installation/getting_wholegraph.md, wholegraph/installation/index.rst, wholegraph/installation/source_build.md
WARNING: [autosummary] failed to import pylibcugraphops.operators.mha_gat_n2n_bwd.
Possible hints:
* AttributeError: module 'pylibcugraphops.operators' has no attribute 'mha_gat_n2n_bwd'
* ImportError:
* ModuleNotFoundError: No module named 'pylibcugraphops.operators.mha_gat_n2n_bwd'
WARNING: [autosummary] failed to import pylibcugraphops.operators.mha_gat_n2n_efeat_bwd.
Possible hints:
* ImportError:
* ModuleNotFoundError: No module named 'pylibcugraphops.operators.mha_gat_n2n_efeat_bwd'
* AttributeError: module 'pylibcugraphops.operators' has no attribute 'mha_gat_n2n_efeat_bwd'
WARNING: [autosummary] failed to import pylibcugraphops.operators.mha_gat_n2n_efeat_fwd.
Possible hints:
* ImportError:
* ModuleNotFoundError: No module named 'pylibcugraphops.operators.mha_gat_n2n_efeat_fwd'
* AttributeError: module 'pylibcugraphops.operators' has no attribute 'mha_gat_n2n_efeat_fwd'
WARNING: [autosummary] failed to import pylibcugraphops.operators.mha_gat_n2n_fwd.
Possible hints:
* ImportError:
* ModuleNotFoundError: No module named 'pylibcugraphops.operators.mha_gat_n2n_fwd'
* AttributeError: module 'pylibcugraphops.operators' has no attribute 'mha_gat_n2n_fwd'

Traceback (most recent call last):
  File "/home/ubuntu/.conda/envs/all_cuda-122_arch-x86_64/lib/python3.11/site-packages/sphinx/ext/autosummary/generate.py", line 395, in generate_autosummary_docs
    name, obj, parent, modname = import_by_name(entry.name)
                                 ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/ubuntu/.conda/envs/all_cuda-122_arch-x86_64/lib/python3.11/site-packages/sphinx/ext/autosummary/__init__.py", line 661, in import_by_name
    raise ImportExceptionGroup('no module named %s' % ' or '.join(tried), exceptions)
sphinx.ext.autosummary.ImportExceptionGroup: no module named pylibcugraphops.pytorch.operators.agg_concat_n2n

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/ubuntu/.conda/envs/all_cuda-122_arch-x86_64/lib/python3.11/site-packages/sphinx/events.py", line 94, in emit
    results.append(listener.handler(self.app, *args))
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/ubuntu/.conda/envs/all_cuda-122_arch-x86_64/lib/python3.11/site-packages/sphinx/ext/autosummary/__init__.py", line 811, in process_generate_options
    generate_autosummary_docs(genfiles, suffix=suffix, base_path=app.srcdir,
  File "/home/ubuntu/.conda/envs/all_cuda-122_arch-x86_64/lib/python3.11/site-packages/sphinx/ext/autosummary/generate.py", line 400, in generate_autosummary_docs
    name, obj, parent, modname = import_ivar_by_name(entry.name)
                                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/ubuntu/.conda/envs/all_cuda-122_arch-x86_64/lib/python3.11/site-packages/sphinx/ext/autosummary/__init__.py", line 720, in import_ivar_by_name
    real_name, obj, parent, modname = import_by_name(name, prefixes, grouped_exception)
                                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/ubuntu/.conda/envs/all_cuda-122_arch-x86_64/lib/python3.11/site-packages/sphinx/ext/autosummary/__init__.py", line 661, in import_by_name
    raise ImportExceptionGroup('no module named %s' % ' or '.join(tried), exceptions)
sphinx.ext.autosummary.ImportExceptionGroup: no module named pylibcugraphops.pytorch.operators

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/ubuntu/.conda/envs/all_cuda-122_arch-x86_64/lib/python3.11/site-packages/sphinx/cmd/build.py", line 276, in build_main
    app = Sphinx(args.sourcedir, args.confdir, args.outputdir,
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/ubuntu/.conda/envs/all_cuda-122_arch-x86_64/lib/python3.11/site-packages/sphinx/application.py", line 262, in __init__
    self._init_builder()
  File "/home/ubuntu/.conda/envs/all_cuda-122_arch-x86_64/lib/python3.11/site-packages/sphinx/application.py", line 335, in _init_builder
    self.events.emit('builder-inited')
  File "/home/ubuntu/.conda/envs/all_cuda-122_arch-x86_64/lib/python3.11/site-packages/sphinx/events.py", line 105, in emit
    raise ExtensionError(__("Handler %r for event %r threw an exception") %
sphinx.errors.ExtensionError: Handler <function process_generate_options at 0x762210477ce0> for event 'builder-inited' threw an exception (exception: no module named pylibcugraphops.pytorch.operators)

Extension error (sphinx.ext.autosummary):
Handler <function process_generate_options at 0x762210477ce0> for event 'builder-inited' threw an exception (exception: no module named pylibcugraphops.pytorch.operators)

Steps taken:

git clone https://github.com/raybellwaves/cugraph.git
cd cugraph
git checkout intersphinx-mapping-test
# Apply https://github.com/rapidsai/cugraph/pull/4331
conda env create -f conda/environments/all_cuda-122_arch-x86_64.yaml
conda activate all_cuda-122_arch-x86_64
./build.sh
./build.sh cugraph-service
./build.sh cugraph-pyg
./build.sh cugraph-dgl
./build.sh cugraph-equivariant
./build.sh nx-cugraph
./build.sh docs

rlratzel

Even though this looks like a test PR I'll approve/merge it since it looks useful for future updates.

…-mapping-test

rlratzel · 2024-05-20T21:06:17Z

/ok to test

rlratzel · 2024-05-20T21:31:43Z

/ok to test

rlratzel · 2024-05-20T21:34:30Z

/merge

test sphinx mapping to networkx

9f2b683

raybellwaves requested review from a team as code owners April 9, 2024 04:42

github-actions bot added the python label Apr 9, 2024

acostadon added this to the 24.06 milestone Apr 9, 2024

acostadon added doc Documentation non-breaking Non-breaking change labels Apr 9, 2024

rlratzel mentioned this pull request Apr 9, 2024

Various docs .rst files still include APIs which have been removed #4330

Closed

rlratzel approved these changes May 20, 2024

View reviewed changes

Merge remote-tracking branch 'upstream/branch-24.06' into intersphinx…

e48f71d

…-mapping-test

Updates copyright date.

82c4fa6

rapids-bot bot merged commit 6bd08d2 into rapidsai:branch-24.06 May 21, 2024

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test sphinx mapping to networkx#4323

test sphinx mapping to networkx#4323
rapids-bot[bot] merged 3 commits intorapidsai:branch-24.06from
raybellwaves:intersphinx-mapping-test

raybellwaves commented Apr 9, 2024 •

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raybellwaves commented Apr 9, 2024 •

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