Skip to content

@stjudecab St. Jude Center for Applied Bioinformatics (CAB)

Change the repository type filter

All

    Repositories list

    15 repositories

    • RSVreconPy

      Public
      A pipeline for Viral genome assembly from NGS data
      Python
      •0•0•0•0•Updated Apr 26, 2026Apr 26, 2026

    • transit2

      Public
      Python
      •
      Other
      •1•0•0•0•Updated Mar 19, 2026Mar 19, 2026

    • test-datasets

      Public
      Test data to be used for automated testing with the nf-core pipelines
      MIT License
      •498•0•0•0•Updated Jan 8, 2026Jan 8, 2026

    • rsvrecon

      Public
      A pipeline for assembling genomic sequences of respiratory syncytial virus (RSV) from NGS data
      Python
      •
      MIT License
      •0•2•0•0•Updated Oct 30, 2025Oct 30, 2025

    • CoCoRV_nextflow_singularity

      Public
      Implementation of CoCoRV pipeline using Nextflow and Singularity
      Perl
      •
      MIT License
      •1•2•0•0•Updated Aug 13, 2025Aug 13, 2025

    • test_datasets

      Public
      Test data used in github actions for stjudecab's bioinformatics pipelines
      MIT License
      •0•0•0•0•Updated Jul 8, 2025Jul 8, 2025

    • stjudecab.github.io

      Public
      Official website for St. Jude CAB
      JavaScript
      •81•5•0•0•Updated Jun 10, 2025Jun 10, 2025

    • containers

      Public
      Bioinformatics containers used in St. Jude CAB
      Perl
      •
      Apache License 2.0
      •0•2•0•0•Updated May 23, 2025May 23, 2025

    • minimind

      Public
      🚀🚀 「大模型」2小时完全从0训练26M的小参数GPT！🌏 Train a 26M-parameter GPT from scratch in just 2h!
      Python
      •
      Apache License 2.0
      •6.1k•0•0•0•Updated Apr 18, 2025Apr 18, 2025

    • configs

      Public
      Config files used to define parameters specific to compute environments at different Institutions
      Nextflow
      •
      MIT License
      •353•0•0•0•Updated Apr 10, 2025Apr 10, 2025

    • fusion-report

      Public
      Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.github.io/fusion-report/exam…
      Python
      •
      GNU General Public License v3.0
      •12•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • modules

      Public
      Repository to host tool-specific module files for the Nextflow DSL2 community!
      Nextflow
      •
      MIT License
      •1k•0•0•0•Updated Sep 26, 2024Sep 26, 2024

    • st-workshop

      Public
      MIT License
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • tools

      Public
      Python package with helper tools for the nf-core community.
      Python
      •
      MIT License
      •239•0•0•0•Updated Jul 25, 2024Jul 25, 2024

    • CoCoRV_nextflow_conda

      Public
      Implementation of CoCoRV pipeline using Nextflow and Micromamba
      Nextflow
      •
      MIT License
      •0•1•1•0•Updated Mar 26, 2024Mar 26, 2024
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.