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    • Documentation for refgenie components
      Python
      0010Updated Apr 12, 2026Apr 12, 2026
    • recipes

      Public
      recipes & asset classes definitions
      GNU General Public License v3.0
      1011Updated Apr 12, 2026Apr 12, 2026
    • refget

      Public
      Python tools for identification and distribution of reference sequences and sequence collections
      Python
      BSD 2-Clause "Simplified" License
      110413Updated Apr 11, 2026Apr 11, 2026
    • Serves a web interface and RESTful API for reference genome assets.
      Python
      BSD 2-Clause "Simplified" License
      31220Updated Apr 11, 2026Apr 11, 2026
    • A Python object for standardized reference genome assets.
      Python
      BSD 2-Clause "Simplified" License
      7210Updated Apr 1, 2026Apr 1, 2026
    • refgenie

      Public
      Reference genome resource manager
      Python
      BSD 2-Clause "Simplified" License
      974260Updated Mar 6, 2026Mar 6, 2026
    • seqcolapi

      Public archive
      Python
      BSD 2-Clause "Simplified" License
      2000Updated Feb 19, 2026Feb 19, 2026
    • UI demo/placeholder for new refgenie interface
      TypeScript
      0000Updated Oct 14, 2025Oct 14, 2025
    • Primary refgenieserver instance
      Python
      0140Updated Aug 12, 2025Aug 12, 2025
    • seqcol

      Public archive
      Implementation of sequence collections
      Jupyter Notebook
      BSD 2-Clause "Simplified" License
      0100Updated Feb 14, 2024Feb 14, 2024
    • Demo of how to use the refgenie plugin with looper
      Python
      0000Updated Jul 10, 2022Jul 10, 2022
    • configuration for an iGenomes refgenieserver
      Python
      1101Updated May 3, 2022May 3, 2022
    • refgenieserver instance for testing
      Python
      0000Updated Aug 13, 2021Aug 13, 2021
    • A demo refgenie plugin
      Python
      BSD 2-Clause "Simplified" License
      0000Updated Jul 9, 2021Jul 9, 2021
    • Nextflow plugin for refgenie compatibility
      Python
      BSD 2-Clause "Simplified" License
      0810Updated Jul 9, 2021Jul 9, 2021
    • Repository for building bowtie/bowtie2 indexes for refgenie
      Python
      0010Updated Apr 27, 2021Apr 27, 2021
    • plantref

      Public
      Refgenieserver content repository for plant genomes server
      Python
      1020Updated Apr 1, 2021Apr 1, 2021
    • Information on deployed refgenieserver instances.
      1000Updated Nov 20, 2020Nov 20, 2020
    • Demo for deploying refgenieserver instance to AWS
      Dockerfile
      0000Updated Jun 23, 2020Jun 23, 2020
    • A demo for automatic deploy of staging for software testing
      Python
      BSD 2-Clause "Simplified" License
      0000Updated Jun 18, 2020Jun 18, 2020
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