Skip to content

@msuefishlab Michigan State University Electric Fish Lab

Change the repository type filter

All

    Repositories list

    37 repositories

    • msuefishlab.github.io

      Public
      SCSS
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Mar 23, 2026Mar 23, 2026

    • gut_content_2025

      Public
      R
      •0•0•0•0•Updated Feb 24, 2026Feb 24, 2026

    • msuefishlab2025.github.io

      Public
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Feb 9, 2026Feb 9, 2026

    • pkings_gwas_2024_master

      Public
      HTML
      •0•1•0•0•Updated Dec 10, 2025Dec 10, 2025

    • eodrecorder2

      Public
      MATLAB Based EOD Recording Software
      MATLAB
      •0•0•12•0•Updated Oct 14, 2025Oct 14, 2025

    • EODduration_geneExpression

      Public
      HTML
      •0•0•0•0•Updated Mar 17, 2025Mar 17, 2025

    • rename_ensembl

      Public
      Script for Renaming Ensembl Genes Based on Prefixes
      0•1•0•0•Updated May 29, 2024May 29, 2024

    • CircosAlignmentPlotter

      Public
      Converts a part of an alignment (.PAF perhaps others sometimes) to a Circos image using BED and fasta files.
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Dec 6, 2023Dec 6, 2023

    • crotalus_rnaseq

      Public
      HTML
      •0•0•0•0•Updated Nov 13, 2023Nov 13, 2023

    • msuefishslab_eorna

      Public
      The EORNA website is designed to store and visualize gene and transcript abundance data on demand as transcripts per million (TPM) across all samples and all th…
      Perl
      •
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Sep 8, 2022Sep 8, 2022

    • molec_evol_epdl2

      Public
      Shell
      •0•0•0•0•Updated Jul 12, 2022Jul 12, 2022

    • msuefishlab_old

      Public
      HTML
      •0•0•0•0•Updated Dec 11, 2021Dec 11, 2021

    • tdmsreader

      Public
      A LabVIEW tdms file reader
      R
      •
      GNU Lesser General Public License v3.0
      •3•6•5•0•Updated Mar 22, 2021Mar 22, 2021

    • paramormyrops_rnaseq

      Public
      Analysis scripts and code for Paramormyrops RNA-seq project
      Shell
      •0•0•0•0•Updated Oct 17, 2020Oct 17, 2020

    • picq_etal_genetic_drift_2020

      Public
      Code Associated with Picq et al. 2020 Evolution
      MATLAB
      •0•0•0•0•Updated Feb 28, 2020Feb 28, 2020

    • data_download

      Public
      bash script to create and populate the data directories for efish comparative genomics work
      Shell
      •0•0•0•0•Updated Oct 24, 2019Oct 24, 2019

    • crisporWebsite

      Public
      All source code of the crispor.org website
      HTML
      •
      Other
      •49•0•0•0•Updated Mar 14, 2019Mar 14, 2019

    • GenABEL

      Public
      :exclamation: This is a read-only mirror of the CRAN R package repository. GenABEL — genome-wide SNP association analysis. Homepage: http://www.genabel.org, ht…
      R
      •15•0•0•0•Updated Feb 26, 2019Feb 26, 2019

    • orthofinder_tests

      Public
      bash and slurm scripts for initial tests on Orthofinder tool
      Shell
      •0•0•0•0•Updated Dec 3, 2018Dec 3, 2018

    • miniBarcoder

      Public
      DNA barcoding using MinION
      Python
      •5•0•0•0•Updated Nov 6, 2018Nov 6, 2018

    • SNPhylo

      Public
      A pipeline to generate a phylogenetic tree from huge SNP data
      Shell
      •
      GNU General Public License v2.0
      •37•0•0•0•Updated Oct 5, 2018Oct 5, 2018

    • wustl_rnaseq

      Public
      Shell
      •0•0•0•0•Updated Aug 21, 2018Aug 21, 2018

    • RATT-with-GFF

      Public
      RATT-with-GFF enables Rapid Annotation Transfer Tool (RATT) to be used with a GFF as your annotation file. RATT is a great tool for transferring annotations fro…
      Python
      •5•0•0•0•Updated Jun 21, 2018Jun 21, 2018

    • trinity_singularity

      Public
      A Singularity File for Running Trinity on the HPCC
      1•0•0•0•Updated Jun 4, 2018Jun 4, 2018

    • eodplotter

      Public
      A pipeline tool for EOD data
      HTML
      •1•0•0•1•Updated May 22, 2018May 22, 2018

    • tdmsviewer

      Public
      Shiny app to view TDMS data
      R
      •1•2•3•0•Updated Mar 23, 2018Mar 23, 2018

    • labview_eod_recorder

      Public
      Source Code for LabView EOD Recorders
      LabVIEW
      •0•0•0•0•Updated Mar 14, 2018Mar 14, 2018

    • gatk_singularity

      Public
      Attempt at Docker/GATK Port to Singularity for MSU HPCC
      0•0•0•0•Updated Feb 26, 2018Feb 26, 2018

    • garrulous-turtle

      Public
      workbook for assembly of the *Paramormyrops kingsleyae* genome
      Shell
      •1•0•0•0•Updated Feb 22, 2018Feb 22, 2018

    • gatk4-data-processing

      Public
      Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
      WDL
      •
      BSD 3-Clause "New" or "Revised" License
      •78•0•0•0•Updated Jan 23, 2018Jan 23, 2018