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    32 repositories

    • reptes

      Public
      Reptes for Earthtunes and so on
      Swift
      •0•0•0•0•Updated Apr 16, 2026Apr 16, 2026

    • RS-Open_Science-Breaking_the_Code

      Public
      Archive for Project 'Breaking the Code'
      HTML
      •0•0•0•0•Updated Apr 2, 2026Apr 2, 2026

    • TF_Positional_Distribution_Model

      Public
      Codes to reproduce figures in "A principled approach to the identification of biologically relevant transcription factor binding sites"
      Jupyter Notebook
      •0•0•0•0•Updated Feb 12, 2026Feb 12, 2026

    • systematic_fraud

      Public
      Code to accompany Richardson et al. (2025), "The entities enabling scientific fraud at scale are large, resilient, and growing rapidly". https://doi.org/10.1073…
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•11•0•0•Updated Aug 27, 2025Aug 27, 2025

    • ARDS_diagnosis

      Public
      Computational pipeline to automatically adjudicate ARDS cases in EHR data
      Jupyter Notebook
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Aug 1, 2025Aug 1, 2025

    • Evolution_of_Scientific_Journals

      Public
      The repository associated with the manuscript "The evolution of interdisciplinarity and internationalization in scientific journals" eLife (2025) DOI: https://d…
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 26, 2025Jul 26, 2025

    • Science_fraud_topic_analysis

      Public archive
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated Jul 15, 2025Jul 15, 2025

    • sem_images

      Public
      Code to accompany "Widespread misidentification of SEM instruments in the peer-reviewed materials science and engineering literature".
      Jupyter Notebook
      •
      Other
      •0•1•0•0•Updated Dec 9, 2024Dec 9, 2024

    • Amaral_Lab_Intro_to_Data_Science

      Public
      Notebooks with lessons for learning Python and its use for Data Science and Scientific Computing applications.
      Jupyter Notebook
      •
      MIT License
      •2•7•0•0•Updated Oct 8, 2024Oct 8, 2024

    • Clinical_states

      Public
      Jupyter Notebook
      •2•0•1•0•Updated Aug 29, 2024Aug 29, 2024

    • fmug

      Public
      Code to generate the Find My Understudied Genes app for Windows, iOS and macOS platforms.
      Dart
      •
      Other
      •0•3•0•0•Updated May 29, 2024May 29, 2024

    • fmug_analysis

      Public
      Code to supplement Richardson et al. 2023 "Meta-Research: understudied genes are lost in a leaky pipeline between genome-wide assays and reporting of results".
      Jupyter Notebook
      •
      Other
      •1•1•0•0•Updated Feb 28, 2024Feb 28, 2024

    • FCSDecoder

      Public
      Swift
      •
      GNU Lesser General Public License v2.1
      •0•0•0•0•Updated Dec 14, 2023Dec 14, 2023

    • benchmarkml

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Oct 30, 2023Oct 30, 2023

    • pyCFI

      Public
      [ABANDONED!] Python-module for inferring cell interfacial tensions from image stacks.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated May 4, 2023May 4, 2023

    • transportation_network_evolution

      Public
      Jupyter Notebook
      •3•11•0•0•Updated Mar 31, 2023Mar 31, 2023

    • docker4all

      Public
      TypeScript
      •1•4•0•0•Updated Feb 8, 2023Feb 8, 2023

    • personality-types

      Public archive
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •6•24•4•0•Updated Jan 2, 2023Jan 2, 2023

    • gene_bot

      Public
      A gene-of-the-day bot for Mastodon.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 31, 2022Dec 31, 2022

    • silhouette-extract

      Public
      Python
      •0•0•0•0•Updated Dec 14, 2022Dec 14, 2022

    • NullSeq

      Public
      Creates Random Coding Sequences with specified GC content and Amino Acid usage
      Python
      •2•10•2•1•Updated Jun 21, 2022Jun 21, 2022

    • questpipe

      Public archive
      Submit jobs to Quest MOAB scheduler integrating it in your awesome python code.
      Python
      •0•2•0•2•Updated Mar 29, 2022Mar 29, 2022

    • Introduction-to-Python-Programming-and-Data-Science

      Public
      Introduction to Python Programming and Data Science
      Jupyter Notebook
      •
      Other
      •43•63•0•0•Updated Aug 27, 2021Aug 27, 2021

    • US_movies_gender_analysis

      Public
      Code and data for reproducing results in PLOS One paper: Long-term patterns of gender imbalance in an industry without ability or level of interest differences
      Jupyter Notebook
      •1•0•0•0•Updated Feb 17, 2020Feb 17, 2020

    • stopwords

      Public
      Jupyter Notebook
      •4•23•0•0•Updated Dec 1, 2019Dec 1, 2019

    • ards_decision_making

      Public archive
      0•0•0•0•Updated Aug 15, 2019Aug 15, 2019

    • synthetic_benchmark_topic_model

      Public
      Python
      •1•4•0•0•Updated Jan 11, 2019Jan 11, 2019

    • waldo

      Public
      Main branch of Waldo repo. Moved from read only bitbuckt repo.
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Nov 10, 2018Nov 10, 2018

    • iCUB

      Public
      Python
      •0•1•0•0•Updated Nov 5, 2017Nov 5, 2017

    • cub_benchmarking

      Public archive
      Jupyter Notebook
      •0•1•0•0•Updated Nov 5, 2017Nov 5, 2017
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