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ADIOS1: Fix Serial Builds, CI: Clang 10->12 #1167

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Merged
ax3l merged 3 commits into from
Jan 14, 2022
Merged

ADIOS1: Fix Serial Builds, CI: Clang 10->12 #1167

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157d5d3
CI: Clang 10->12
ax3l Jan 12, 2022
6b1e0fb
Disable ADIOS1
ax3l Jan 13, 2022
f4670bc
ADIOS1 w/o MPI: Try to re-enable
ax3l Jan 13, 2022
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18 changes: 6 additions & 12 deletions ...s/clang10_nopy_ompi_h5_ad1_ad2/spack.yaml → .../clang12_py38_nompi_h5_ad1_ad2/spack.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,25 +9,19 @@ spack:
- adios
- adios2
- hdf5
- openmpi

packages:
hdf5:
variants: ~mpi
adios:
variants: ~zfp ~sz ~lz4 ~blosc
variants: ~mpi ~zfp ~sz ~lz4 ~blosc
adios2:
variants: ~zfp ~sz ~png ~dataman ~python ~fortran ~ssc ~shared ~bzip2
variants: ~mpi ~zfp ~sz ~png ~dataman ~python ~fortran ~ssc ~shared ~bzip2
cmake:
externals:
- spec: "cmake"
prefix: /usr
buildable: False
openmpi:
externals:
- spec: "openmpi"
prefix: /usr
buildable: False
perl:
externals:
- spec: "perl"
Expand All @@ -43,7 +37,7 @@ spack:
variants: ~fortran
providers:
mpi: [openmpi]
compiler: [clang@10.0.0]
compiler: [clang@12.0.0]

compilers:
- compiler:
Expand All @@ -53,11 +47,11 @@ spack:
modules: []
operating_system: ubuntu20.04
paths:
cc: /usr/lib/llvm-10/bin/clang
cxx: /usr/lib/llvm-10/bin/clang++
cc: /usr/lib/llvm-12/bin/clang
cxx: /usr/lib/llvm-12/bin/clang++
f77: /usr/bin/gfortran
fc: /usr/bin/gfortran
spec: clang@10.0.0
spec: clang@12.0.0
target: x86_64

config:
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20 changes: 12 additions & 8 deletions .github/workflows/linux.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -106,29 +106,33 @@ jobs:
# TODO
# clang6_py36_nompi_h5_ad1_ad2_libcpp

clang10_py38_nompi_h5_ad1_ad2_libcpp:
clang12_py38_nompi_h5_ad1_ad2:
runs-on: ubuntu-20.04
if: github.event.pull_request.draft == false
steps:
- uses: actions/checkout@v2
- name: Spack Cache
uses: actions/cache@v2
with: {path: /opt/spack, key: clang12_py38_nompi_h5_ad1_ad2 }
- name: Install
run: |
sudo apt-get update
sudo apt-get install clang-10 libc++-dev libc++abi-dev libhdf5-dev python3
python3 -m pip install -U pip
python3 -m pip install -U numpy
# TODO ADIOS1 ADIOS2
sudo apt-get install clang-12 libhdf5-dev python3 python3-pip python3-numpy python3-pandas
sudo .github/workflows/dependencies/install_spack
- name: Build
env: {CC: clang-10, CXX: clang++-10, CXXFLAGS: -Werror -Wno-deprecated-declarations}
# TODO
# , CXXFLAGS: -nostdinc++ -I/usr/include/c++/10 -I/usr/include/x86_64-linux-gnu/c++/10/, LDFLAGS: -stdlib=libc++ -lc++ -lc++abi}
env: {CC: clang-12, CXX: clang++-12, CXXFLAGS: -Werror -Wno-deprecated-declarations}
run: |
eval $(spack env activate --sh .github/ci/spack-envs/clang12_py38_nompi_h5_ad1_ad2/)
spack install

share/openPMD/download_samples.sh build
chmod u-w build/samples/git-sample/*.h5
cmake -S . -B build \
-DopenPMD_USE_PYTHON=ON \
-DopenPMD_USE_MPI=OFF \
-DopenPMD_USE_HDF5=ON \
-DopenPMD_USE_ADIOS1=ON \
-DopenPMD_USE_ADIOS2=ON \
-DopenPMD_USE_INVASIVE_TESTS=ON \
-DCMAKE_VERBOSE_MAKEFILE=ON
cmake --build build --parallel 2
Expand Down