URI formatting of the default "TODO" value for "CogAtlasID" #473
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BIDS [specifies](https://bids-specification.readthedocs.io/en/v1.4.1/04-modality-specific-files/01-magnetic-resonance-imaging-data.html#fmri-task-information) that the `"CogAtlasID"` should be a [URI](https://bids-specification.readthedocs.io/en/v1.4.1/02-common-principles.html#uniform-resource-indicator). Fixes nipy#472
Codecov Report
@@ Coverage Diff @@
## master #473 +/- ##
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- Coverage 76.13% 75.96% -0.17%
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Files 37 38 +1
Lines 2962 2996 +34
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+ Hits 2255 2276 +21
- Misses 707 720 +13
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Indeed, should be a uri, but I don't see any doi for a sample url https://www.cognitiveatlas.org/task/id/trm_56674133b666c/ , everyday weighed be the DOI prefix? |
yarikoptic
reviewed
Dec 9, 2020
Co-authored-by: Yaroslav Halchenko <[email protected]>
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damn you ruined our coverage! ;) ok, let's proceed |
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Various improvements and compatibility/support (dcm2niix, datalad, duecredit) changes. Major change is placement of output files to the target output directory during conversion. - #454 zenodo referencing in README.rst and support for ducredit for heudiconv and reproin heuristic - #445 more tutorial references in README.md - [#485][] placed files during conversion right away into the target directory (with a `_heudiconv???` suffix, renamed into ultimate target name later on), which avoids hitting file size limits of /tmp ([#481][]) and helped to avoid a regression in dcm2nixx 1.0.20201102 - #477 replaced `rec-<magnitude|phase>` with `part-<mag|phase>` now that BIDS supports the part entity - #473 made default for CogAtlasID to be a TODO URL - #459 made AcquisitionTime used for acq_time scans file field - #451 retained sub-second resolution in scans files - #442 refactored code so there is now heudiconv.main.workflow for more convenient use as a Python module - minimal version of nipype set to 1.2.3 to guarantee correct handling of DWI files ([#480][]) - `heudiconvDCM*` temporary directories are removed now ([#462][]) - compatibility with DataLad 0.13 ([#464][]) - #443 pathlib as a dependency (we are Python3 only now) * tag 'v0.9.0': Add a helper rule to upload to pypi update changelog reference as part of prep release [DATALAD RUNCMD] prepare the release CHANGELOG entry for 0.9.0
yarikoptic
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Dec 23, 2020
Various improvements and compatibility/support (dcm2niix, datalad, duecredit) changes. Major change is placement of output files to the target output directory during conversion. - #454 zenodo referencing in README.rst and support for ducredit for heudiconv and reproin heuristic - #445 more tutorial references in README.md - [#485][] placed files during conversion right away into the target directory (with a `_heudiconv???` suffix, renamed into ultimate target name later on), which avoids hitting file size limits of /tmp ([#481][]) and helped to avoid a regression in dcm2nixx 1.0.20201102 - #477 replaced `rec-<magnitude|phase>` with `part-<mag|phase>` now that BIDS supports the part entity - #473 made default for CogAtlasID to be a TODO URL - #459 made AcquisitionTime used for acq_time scans file field - #451 retained sub-second resolution in scans files - #442 refactored code so there is now heudiconv.main.workflow for more convenient use as a Python module - minimal version of nipype set to 1.2.3 to guarantee correct handling of DWI files ([#480][]) - `heudiconvDCM*` temporary directories are removed now ([#462][]) - compatibility with DataLad 0.13 ([#464][]) - #443 pathlib as a dependency (we are Python3 only now) * tag 'v0.9.0': Do no bother ensuring that version changed - should be no changes
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BIDS specifies that the
"CogAtlasID"should be a URI.Fixes #472