Switch to uv and prek on pipeline linting - #3942
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Not sure why am I getting failed tests, this PR doesn't change any of the actual nextflow code. |
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It is because we merged nf-core/modules#9333, which converted some modules to the new version topic syntax and unfortunately one of them was linted for the old syntax in the test. I am working on update of the test |
mashehu
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Dec 11, 2025
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Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
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This PR modernizes and speeds up pipeline linting by using uv and prek.
PR checklist
CHANGELOG.mdis updateddocsis updated