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fix including modules.config #3356

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Merged
mirpedrol merged 3 commits into from
Dec 13, 2024
Merged

fix including modules.config #3356

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4cf8607
fix including modules.config
mirpedrol Dec 13, 2024
eed09ba
[automated] Update CHANGELOG.md
nf-core-bot Dec 13, 2024
a2c2339
revert #3301 until we add linting from #2508
mirpedrol Dec 13, 2024
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Original file line number Diff line number Diff line change
Expand Up @@ -10,6 +10,8 @@

### Modules

- fix including modules.config ([#3356](https://github.com/nf-core/tools/pull/3356))

### Subworkflows

### General
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10 changes: 5 additions & 5 deletions nf_core/pipeline-template/nextflow.config
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Expand Up @@ -77,11 +77,6 @@ params {
includeConfig 'conf/base.config'
{%- else %}

{% if modules -%}
// Load modules.config for DSL2 module specific options
includeConfig 'conf/modules.config'
{%- endif %}

process {
// TODO nf-core: Check the defaults for all processes
cpus = { 1 * task.attempt }
Expand All @@ -94,6 +89,11 @@ process {
}
{%- endif %}

{% if modules -%}
// Load modules.config for DSL2 module specific options
includeConfig 'conf/modules.config'
{%- endif %}

profiles {
debug {
dumpHashes = true
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