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Update template according to new specification #2985

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Merged
mirpedrol merged 5 commits into from
May 22, 2024
Merged

Update template according to new specification #2985

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c448406
update template according to PR 5281 in modules
famosab May 15, 2024
4ca14b4
update changelog
famosab May 15, 2024
808692c
Merge branch 'dev' into module-template-update
maxulysse May 15, 2024
51447b2
Apply suggestions from code review
maxulysse May 15, 2024
5fc3069
Merge branch 'dev' into module-template-update
mirpedrol May 22, 2024
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8 changes: 4 additions & 4 deletions nf_core/module-template/tests/main.nf.test.j2
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Original file line number Diff line number Diff line change
Expand Up @@ -28,10 +28,10 @@ nextflow_process {
{% if has_meta %}
input[0] = [
[ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true)
file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/bam/test.paired_end.bam', checkIfExists: true)
]
{%- else %}
input[0] = file(params.test_data['sarscov2']['illumina']['test_single_end_bam'], checkIfExists: true)
input[0] = file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/bam/test.single_end.bam', checkIfExists: true)
{%- endif %}
"""
}
Expand Down Expand Up @@ -60,10 +60,10 @@ nextflow_process {
{% if has_meta %}
input[0] = [
[ id:'test', single_end:false ], // meta map
file(params.test_data['sarscov2']['illumina']['test_paired_end_bam'], checkIfExists: true)
file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/bam/test.paired_end.bam', checkIfExists: true)
]
{%- else %}
input[0] = file(params.test_data['sarscov2']['illumina']['test_single_end_bam'], checkIfExists: true)
input[0] = file(params.modules_testdata_base_path + 'genomics/sarscov2/illumina/bam/test.single_end.bam', checkIfExists: true)
{%- endif %}
"""
}
Expand Down