Add nf-core subworkflows update command

[mirpedrol]

Close #1892

Update all modules and subworkflows used by the subworkflow being updated.
Update all subworkflows that use the module being updated.

Raise a warning informing that it's advised to keep everything up to date. Prompt a questionary to confirm the update of all modules/subworkflows related to the updated component.
New option --recursive updates everything without asking.

PR checklist

• This comment contains a description of changes (with reason)
• CHANGELOG.md is updated
• If you've fixed a bug or added code that should be tested, add tests!
• Documentation in docs is updated

[codecov]

Codecov Report

Merging #2019 (e1e0fdc) into dev (955e763) will increase coverage by 1.56%.
The diff coverage is 81.21%.

@@            Coverage Diff             @@
##              dev    #2019      +/-   ##
==========================================
+ Coverage   63.74%   65.31%   +1.56%     
==========================================
  Files          41       42       +1     
  Lines        4913     5322     +409     
==========================================
+ Hits         3132     3476     +344     
- Misses       1781     1846      +65     

Impacted Files	Coverage Δ
nf_core/__main__.py	59.46% <63.63%> (+0.09%)	⬆️
nf_core/components/update.py	82.21% <82.21%> (ø)
nf_core/components/components_command.py	72.22% <0.00%> (+1.58%)	⬆️
nf_core/modules/modules_differ.py	89.94% <0.00%> (+5.02%)	⬆️

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[mashehu]

Don't forget to also update the rich_click.COMMAND_GROUPS https://github.com/nf-core/tools/pull/2019/files#diff-e6f8954a9465a8e9ca57cbad1b1b132d49323cacde557432d7af2ab0fbbf2497R61

[mirpedrol]

@nf-core-bot fix linting

[mirpedrol]

@mashehu I think I'm ready to merge if you agree after the review changes 🙂

[mashehu]

Yes, it's good to go!