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Restrict ARM CI tests to Docker profile only #1650

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Merged
pinin4fjords merged 3 commits into from
Dec 4, 2025
Merged

Restrict ARM CI tests to Docker profile only #1650

pinin4fjords merged 3 commits into from
Dec 4, 2025
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@pinin4fjords pinin4fjords commented Dec 4, 2025

Summary

  • Restrict ARM CI tests to use only Docker profile, removing conda and singularity
  • Simplifies the test matrix for ARM runners

Test plan

  • Verify ARM CI workflow runs successfully with Docker profile

🤖 Generated with Claude Code

pinin4fjords and others added 2 commits December 4, 2025 16:50
@pinin4fjords @claude
Restrict ARM CI tests to Docker profile only
09069fd 
🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <[email protected]>
@pinin4fjords @claude
Update changelog for PR #1650
e66be3d 
🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <[email protected]>
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github-actions bot commented Dec 4, 2025 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 2a8c2dc

+| ✅ 284 tests passed       |+
#| ❔   8 tests were ignored |#
!| ❗  10 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: assets/multiqc_config.yml
  • nextflow_config - Config manifest.version should end in dev: 3.22.1
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in nextflow.config: Specify any additional parameters here
  • pipeline_if_empty_null - ifEmpty(null) found in /home/runner/work/rnaseq/rnaseq/subworkflows/local/prepare_genome/main.nf: _ versions = ch_versions.ifEmpty(null) // channel: [ versions.yml ]
    _

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.5.1
  • Run at 2025-12-04 17:33:46

maxulysse
maxulysse reviewed Dec 4, 2025
View reviewed changes
@pinin4fjords @claude
Restore isMain and exclude sections for template tracking
2a8c2dc 
Keep the conditional exclusion structure even with docker-only profile
to make it easier to track template updates from nf-test.yml.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <[email protected]>
@pinin4fjords pinin4fjords merged commit f347d2b into dev Dec 4, 2025
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@maxulysse maxulysse maxulysse approved these changes

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@pinin4fjords @maxulysse