Long merge rsem

[EladH1]

PR checklist

• This comment contains a description of changes (with reason).

1. getting FPKM, length, effective_length in both genes and transcripts data.
2. getting IsoPct also for transcripts.
3. long format is also very convenient.

• If you've fixed a bug or added code that should be tested, add tests!
  yes
• If you've added a new tool - have you followed the pipeline conventions in the contribution docs
• If necessary, also make a PR on the nf-core/rnaseq branch on the nf-core/test-datasets repository.
• Make sure your code lints (nf-core pipelines lint).
• Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
• Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
• Usage Documentation in docs/usage.md is updated.
• Output Documentation in docs/output.md is updated.
• CHANGELOG.md is updated.
• README.md is updated (including new tool citations and authors/contributors).

[nf-core-bot]

Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.3.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

[EladH1]

[✗] 0 Tests Failed

[mashehu]

@nf-core-bot fix linting

[vagkaratzas]

I am not an rnaseq developer, but this seems straightforward. Maybe just also update the CHANGELOG.md with the PR addition, and should be good to go.

[EladH1]

Hi @vagkaratzas ,
thanks for you review
Do you think this is enough for change log?

[vagkaratzas]

Looks good!