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pinin4fjords merged 1 commit into from
Nov 26, 2025
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Bump version to 3.22.0 ahead of release #1638

pinin4fjords merged 1 commit into from
Nov 26, 2025
+38 −17

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@pinin4fjords pinin4fjords commented Nov 26, 2025

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/rnaseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

🤖 Generated with Claude Code

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github-actions bot commented Nov 26, 2025 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 124552b

+| ✅ 283 tests passed       |+
#| ❔   8 tests were ignored |#
!| ❗  10 tests had warnings |!
Details

❗ Test warnings:

  • files_exist - File not found: assets/multiqc_config.yml
  • nextflow_config - Config manifest.version should end in dev: 3.22.0
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in main.nf: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in main.nf: Optionally add bibliographic entries to this list.
  • pipeline_todos - TODO string in main.nf: Only uncomment below if logic in toolCitationText/toolBibliographyText has been filled!
  • pipeline_todos - TODO string in nextflow.config: Specify any additional parameters here
  • pipeline_if_empty_null - ifEmpty(null) found in /home/runner/work/rnaseq/rnaseq/subworkflows/local/prepare_genome/main.nf: _ versions = ch_versions.ifEmpty(null) // channel: [ versions.yml ]
    _

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.5.1
  • Run at 2025-11-26 10:08:10

JoseEspinosa
JoseEspinosa approved these changes Nov 26, 2025
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Does not need the ro-crate-metadata.json also be bumped?

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pinin4fjords commented Nov 26, 2025

Does not need the ro-crate-metadata.json also be bumped?

To be honest I was expecting the linting to complain about that, but it hasn't. Has the criteria changed? I can run the update command anyway

@pinin4fjords @claude
Bump version to 3.22.0 ahead of release
124552b 
🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <[email protected]>
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JoseEspinosa commented Nov 26, 2025

Does not need the ro-crate-metadata.json also be bumped?

To be honest I was expecting the linting to complain about that, but it hasn't. Has the criteria changed? I can run the update command anyway

They changed something to avoid the ro-crate always breaking linting but not sure what

@pinin4fjords pinin4fjords merged commit 4c6bdce into dev Nov 26, 2025
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@pinin4fjords pinin4fjords deleted the release/3.22.0 branch November 26, 2025 10:25
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