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Fix bbsplit index staging by using symlinks #1631

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pinin4fjords merged 2 commits into from
Nov 25, 2025
+14 −15
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Fix bbsplit index staging by using symlinks #1631

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6927e31
Fix bbsplit index staging by using symlinks instead of full copy
pinin4fjords Nov 25, 2025
0877ff1
Update CHANGELOG.md for PR #1631
pinin4fjords Nov 25, 2025
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -27,6 +27,7 @@ Special thanks to the following for their contributions to the release:
- [PR #1624](https://github.com/nf-core/rnaseq/pull/1624) - Document RSeQC inner_distance limitation for genomes with large chromosomes (>500 Mb), such as plant genomes
- [PR #1625](https://github.com/nf-core/rnaseq/pull/1625) - Add documentation warning about Qualimap read counting bug ([#1273](https://github.com/nf-core/rnaseq/issues/1273))
- [PR #1628](https://github.com/nf-core/rnaseq/pull/1628) - Template update for nf-core/tools v3.5.1
- [PR #1631](https://github.com/nf-core/rnaseq/pull/1631) - Fix bbsplit index staging by using symlinks instead of full copy

## [[3.21.0](https://github.com/nf-core/rnaseq/releases/tag/3.21.0)] - 2025-09-18

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2 changes: 1 addition & 1 deletion modules.json
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Expand Up @@ -7,7 +7,7 @@
"nf-core": {
"bbmap/bbsplit": {
"branch": "master",
"git_sha": "fa1477128e0ff24675c8f56d6c334fcc323025c4",
"git_sha": "6da7216c83d9d885bdeb7aef1bcb9b51a90f370b",
"installed_by": ["fastq_qc_trim_filter_setstrandedness", "modules"]
},
"bedtools/genomecov": {
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26 changes: 12 additions & 14 deletions modules/nf-core/bbmap/bbsplit/main.nf
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