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@AlenaNik AlenaNik commented Mar 19, 2025

While going through the setup guide, noticed a duplicated warning message, and updated the README.md file.

CleanShot 2025-03-19 at 12 06 46@2x

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/rnaseq branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

Fixed duplicated warning message
@nf-core-bot
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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.0.2.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

@pinin4fjords
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Thank you for the fix @AlenaNik! Could you update the changelog please?

@AlenaNik
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@pinin4fjords updated! Hope this works :D If it's faster to make this change on any current dev branch you have, that's also an option

@adamrtalbot
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@pinin4fjords why are all the tests running?
image

@AlenaNik
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@pinin4fjords I'm missing the magic merge button, but I believe it's for safety reasons. The PR seems to be ready to go!

@adamrtalbot adamrtalbot merged commit 174d5b2 into nf-core:dev Mar 26, 2025
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4 participants