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Move channel operations outside of the onComplete() block #1463

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Merged
robsyme merged 2 commits into from
Dec 9, 2024
Merged

Move channel operations outside of the onComplete() block #1463

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9b62f06
Move channel operations outside of the onComplete() block
robsyme Dec 5, 2024
532497b
Add changelog entry
robsyme Dec 6, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -16,6 +16,7 @@ Special thanks to the following for their contributions to the release:

- [PR #1369](https://github.com/nf-core/rnaseq/pull/1369) - Add umicollapse as an alternative to umi-tools
- [PR #1461](https://github.com/nf-core/rnaseq/pull/1461) - Add FASTQ linting during preprocessing
- [PR #1463](https://github.com/nf-core/rnaseq/pull/1463) - Move channel operations outside of the onComplete() block

### Software dependencies

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4 changes: 3 additions & 1 deletion subworkflows/local/utils_nfcore_rnaseq_pipeline/main.nf
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Expand Up @@ -116,6 +116,8 @@ workflow PIPELINE_COMPLETION {
id, status -> pass_strand_check[id] = status
}

def multiqc_report_list = multiqc_report.toList()

//
// Completion email and summary
//
Expand All @@ -128,7 +130,7 @@ workflow PIPELINE_COMPLETION {
plaintext_email,
outdir,
monochrome_logs,
multiqc_report.toList()
multiqc_report_list.getVal()
)
}

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