nf-core · maxulysse · Oct 23, 2024 · Oct 23, 2024 · Oct 23, 2024
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -21,6 +21,7 @@ Special thanks to the following for their contributions to the release:
 - [PR #1424](https://github.com/nf-core/rnaseq/pull/1424) - Patch sortmerna to 4.3.7 for ARM compatibility
 - [PR #1425](https://github.com/nf-core/rnaseq/pull/1425) - Add profile for ARM compatibility
 - [PR #1432](https://github.com/nf-core/rnaseq/pull/1432) - Bump versions for 3.17.0 release
+- [PR #1434](https://github.com/nf-core/rnaseq/pull/1434) - Default registry is quay.io for all containers
 
 ## [[3.16.1](https://github.com/nf-core/rnaseq/releases/tag/3.16.1)] - 2024-10-16
 

diff --git a/modules.json b/modules.json
@@ -24,7 +24,8 @@
                     "cat/fastq": {
                         "branch": "master",
                         "git_sha": "a1abf90966a2a4016d3c3e41e228bfcbd4811ccc",
-                        "installed_by": ["fastq_qc_trim_filter_setstrandedness", "modules"]
+                        "installed_by": ["fastq_qc_trim_filter_setstrandedness", "modules"],
+                        "patch": "modules/nf-core/cat/fastq/cat-fastq.diff"
                     },
                     "custom/catadditionalfasta": {
                         "branch": "master",
@@ -221,12 +222,14 @@
                     "star/align": {
                         "branch": "master",
                         "git_sha": "a5ad53288c79fa52c5ae708c317e09ec2dd149ab",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/star/align/star-align.diff"
                     },
                     "star/genomegenerate": {
                         "branch": "master",
                         "git_sha": "a5ad53288c79fa52c5ae708c317e09ec2dd149ab",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/star/genomegenerate/star-genomegenerate.diff"
                     },
                     "stringtie/stringtie": {
                         "branch": "master",

diff --git a/modules/nf-core/bedtools/genomecov/bedtools-genomecov.diff b/modules/nf-core/bedtools/genomecov/bedtools-genomecov.diff
diff --git a/modules/nf-core/bedtools/genomecov/main.nf b/modules/nf-core/bedtools/genomecov/main.nf
diff --git a/modules/nf-core/cat/fastq/cat-fastq.diff b/modules/nf-core/cat/fastq/cat-fastq.diff
diff --git a/modules/nf-core/cat/fastq/main.nf b/modules/nf-core/cat/fastq/main.nf
diff --git a/modules/nf-core/sortmerna/main.nf b/modules/nf-core/sortmerna/main.nf
diff --git a/modules/nf-core/sortmerna/sortmerna.diff b/modules/nf-core/sortmerna/sortmerna.diff
diff --git a/modules/nf-core/star/align/main.nf b/modules/nf-core/star/align/main.nf
diff --git a/modules/nf-core/star/align/star-align.diff b/modules/nf-core/star/align/star-align.diff
diff --git a/modules/nf-core/star/genomegenerate/main.nf b/modules/nf-core/star/genomegenerate/main.nf