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Add BBSplit stats to MultiQC in fastq_qc_trim_filter_setstrandedness subworkflow (#9559)
Add BBSplit stats to MultiQC files in fastq_qc_trim_filter_setstrandedness Pass BBSplit stats output to MultiQC for visualization of read binning statistics. MultiQC 1.33+ includes support for parsing BBSplit stats.txt files and displaying per-sample read distribution across reference genomes. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 4.5 <[email protected]>
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subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/main.nf

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@@ -257,6 +257,7 @@ workflow FASTQ_QC_TRIM_FILTER_SETSTRANDEDNESS {
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BBMAP_BBSPLIT.out.primary_fastq.set { ch_filtered_reads }
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ch_versions = ch_versions.mix(BBMAP_BBSPLIT.out.versions.first())
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ch_multiqc_files = ch_multiqc_files.mix(BBMAP_BBSPLIT.out.stats)
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if (!skip_linting) {
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FQ_LINT_AFTER_BBSPLIT(

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