v0.5.0

0.5.0 (2025-11-20)

Features

• add HPRC release 2 database (HPRC.r2) (a329fa9)
• support for NOHUMAN_DB environment variable (ec1478f)
• support multi-version databases with manifest (553ab72)

v0.4.0

0.4.0 (2025-07-30)

Features

• add Kraken2 report option with aggregate counts/clade (#14) (100b98b)

v0.3.0

0.3.0 (2024-10-01)

Features

• add confidence threshold option --conf (419ede9)
• add kraken2 classification output file option -k (a4146bb)

v0.2.1

0.2.1 (2024-09-23)

Bug Fixes

• deps: remove openssl dep and downgrade lzma (1f2da59)

v0.2.0

0.2.0 (2024-09-23)

Features

• add bzip2 compression (05e8b91)
• add flag to keep human reads instead (50a5ccb)
• add gzip compression of output (79bbbf4)
• add kraken2 stats to log (c8fe418)
• add xz compression of output (00d5ffa)
• add zstd compression of output (5de5332)

v0.1.1

0.1.1 (2024-07-22)

Bug Fixes

• IMPORTANT!! previous versions were emitting human reads [see #2] (319eaed)
• more robust validation of db directory (0377cd6)

v0.1.0

0.1.0 (2023-12-14)

Features

• add database download functionality (0ebc674)
• add progress bar (3c29372)
• check dependencies option (64353a3)
• initial commit (3752150)
• run kraken (90a6e14)

Bug Fixes

• check input path exists when parsing cli (1ce7150)
• correct db path (9ea852f)
• don't load whole database into memory when downloading (3e9ea23)
• dont check if db exists on --check (16bf181)
• exit gracefully after download if no input (189820d)
• ignore gz suffix when naming output (c558ce7)
• make is_executable more portable (c228686)