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In output VCF, : is used as separator in the FILTER column instead of ;.

Status: Open.

#186 In marbl/parsnp;

· bkille opened on Jun 1, 2026

Multifasta references not handled in the PhiPack bed file (parsnp.rec); parsnp 2.1.4

Status: Open.

#181 In marbl/parsnp;

· sconlan opened on Aug 5, 2025

Error in run of 732 genomes

Status: Open.

#180 In marbl/parsnp;

· naifahim opened on Jun 21, 2025

Error with ggr

Status: Open.

#176 In marbl/parsnp;

· ingridvanw opened on Mar 13, 2025

Troubleshooting creating a SNP distance from Parsnp .ggr file

Status: Open.

#172 In marbl/parsnp;

· djbradshaw2 opened on Jan 17, 2025

homoplastic vs unique SNPs

Status: Open.

#171 In marbl/parsnp;

· bkille opened on Jan 16, 2025

gziped files

Status: Open.

#155 In marbl/parsnp;

· jsgounot opened on Jul 3, 2024

No SNPs left after intersection of partitions (--min-partition-size option)

Status: Open.

#153 In marbl/parsnp;

· doy-pin opened on Jun 23, 2024

VCF file does not contain indel information

Status: Open.

#137 In marbl/parsnp;

· Archaea810 opened on Jan 3, 2024

Feature Request: use pre-computed alignment

Status: Open.

#130 In marbl/parsnp;

· chrisgulvik opened on Aug 22, 2023

Creating empty mblocks file

Status: Open.

#124 In marbl/parsnp;

· lkavan2 opened on Apr 20, 2023

Reference Sequence SNP Call

Status: Open.

#118 In marbl/parsnp;

· hdesale2408 opened on Jul 19, 2022