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khan-u/README.md

Hi, I enjoy working on computational tools to advance behavioral neuroscience research.

Some things I've worked on:

Neural signal analysis

  • eeg-feat-ext
    High-throughput pipeline for extracting cycle-level theta waveform features from human iEEG, built to support a waveform-shape control analysis which revealed HPC phase-amplitude coupling as a biomarker for memory.

Behavioral trajectory analysis

  • trajectory-intelligence-dashboard
    A visualization for open-field behavior, with filtering and directional trajectory views. This analysis was complemented by OpenCV-based neural image processing CaImAn to investigate place cell encoding in rats.

Recent open-source work (work in progress)

  • movement Issue #873 Proposed 4 collective behavior metrics (polarization, milling, group spread, leadership) + 2 supporting pairwise metrics (egocentric angle, radial/tangent velocity) for multi-animal tracking analysis.

  • movement PR #875 Added compute_polarization() for collective behavior analysis, supporting both orientation polarization from body-axis keypoints and heading polarization from displacement vectors.

  • movement PR #945 Added a skeleton-agnostic anterior/posterior body-axis inference pipeline that uses geometry and motion to validate user-specified body-axis keypoint pairs and suggest better posterior → anterior pairs when needed.

  • movement PR #948 Extended vector.py utilities to support 3D coordinate transforms (Cartesian, cylindrical, spherical), enabling future 3D polarization analysis.

Focus

Neural signal processing · Behavioral time-series analysis · Statistical learning · Neuronal encoding ⇄ decoding

Pinned Loading

  1. eeg-feat-ext eeg-feat-ext Public

    High-throughput, cycle-level neural signal analytics validated on clinical-scale iEEG data for cognitive biomarker discovery

    MATLAB 3

  2. trajectory-intelligence-dashboard trajectory-intelligence-dashboard Public

    time-series filtering and visualization of spatial trajectories

    MATLAB 1

  3. movement movement Public

    Forked from neuroinformatics-unit/movement

    A Python toolbox for analysing animal body movements across space and time

    Python

  4. RS2-C RS2-C Public

    RuneScape 2 Implemented in the C Language (Protocol #225)

    C