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Pinned KBase dependencies to specific commits. #29

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Merged
dakotablair merged 1 commit into from
Apr 4, 2025
Merged

Pinned KBase dependencies to specific commits. #29

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15 changes: 9 additions & 6 deletions scripts/refdata-load.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -3,17 +3,20 @@
set -x
set -e

# Retrieve static data relation engine
git clone --depth 1 \
https://github.com/kbase/relation_engine.git \
/data/relation_engine
# Retrieve static data exascale_data
git clone --depth 1 \
git clone \
https://github.com/kbase/exascale_data.git \
/data/exascale_data
cd /data/exascale_data
git reset --hard 471e89d4f6aa1b9756b08e66aff3f9191d7dfe84
# Retrieve static data relation engine
git clone \
https://github.com/kbase/relation_engine.git \
/data/relation_engine
cd /data/relation_engine
git reset --hard 2a28213cc42c5ee566f17fb7bf46de38e5c17e4d
# Validate exascale_data using importers.djornl.parser
pip install -r /data/relation_engine/requirements.txt
cd /data/relation_engine
PYTHONUNBUFFERED=yes RES_ROOT_DATA_PATH=/data/exascale_data/prerelease/ \
python -m importers.djornl.parser --dry-run
# remove the database file if it exists
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