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Hello

Should I manually add a small regularization term to the denominator (e.g., + 1.0e-9) in my material derivative expression?

Yes you should make sure denominators do not go to 0. Not necessarily with a summed term, you can also do something like:
if (eta > 1e-9, real expression involving the fraction, (else) 0 for the whole term)

Solver Strategy: For this type of unconstrained multi-order-parameter system, is PJFNK preferred over NEWTON?

PJFNK is better suited if the Jacobian is not exact. While DerivativeParsedMaterial are capable of handling derivatives, it could come from somewhere else.
In this page:
https://mooseframework.inl.gov/moose/application_usage/failed_solves.html
we…

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