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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 810 162

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 176 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 325 54

  4. vizarr vizarr Public

    A minimal Zarr image viewer based on Viv.

    TypeScript 166 33

  5. CHIEF CHIEF Public

    Clinical Histopathology Imaging Evaluation Foundation Model

    Python 673 107

Repositories

Showing 10 of 383 repositories
  • scellop Public

    Cell Population Viewer

    hms-dbmi/scellop’s past year of commit activity
    TypeScript 1 MIT 1 5 2 Updated Nov 4, 2025
  • picsure-dictionary-etl Public
    hms-dbmi/picsure-dictionary-etl’s past year of commit activity
    Java 1 Apache-2.0 0 0 2 Updated Nov 4, 2025
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control’s past year of commit activity
    1 Apache-2.0 8 0 1 Updated Nov 4, 2025
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend’s past year of commit activity
    TypeScript 1 Apache-2.0 0 0 8 Updated Nov 4, 2025
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 5 1 1 Updated Nov 4, 2025
  • avillachlab-jenkins-bdc-etl Public
    hms-dbmi/avillachlab-jenkins-bdc-etl’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Nov 3, 2025
  • biodata_catalyst_stigmatizing_variables Public
    hms-dbmi/biodata_catalyst_stigmatizing_variables’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 0 0 0 Updated Nov 3, 2025
  • pic-sure-all-in-one Public
    hms-dbmi/pic-sure-all-in-one’s past year of commit activity
    Shell 4 Apache-2.0 12 0 0 Updated Nov 3, 2025
  • pic-sure-hpds Public
    hms-dbmi/pic-sure-hpds’s past year of commit activity
    Java 3 Apache-2.0 6 0 2 Updated Nov 3, 2025
  • hypatio-app Public
    hms-dbmi/hypatio-app’s past year of commit activity
    Python 4 1 0 7 Updated Nov 3, 2025
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